Gene omics information

Query gene ID	Os11g0432600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	73.7	Os11g0432600	AK059916.1	-	Beta-ketoacyl reductase GL8B	3e+0	At4g31580	SRZ-22	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os03g0859100	AK060992.1	-	Lipolytic enzyme, G-D-S-L family protein	2e-1	At5g40630	ubiquitin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os09g0360500	AK105487.1	-	Conserved hypothetical protein	1e-2	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os01g0529800	AK101002.1	-	The start codon is not identified.	3e-4	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os01g0799500	AU066087	-	Methyladenine glycosylase family protein	1e-8	At3g12710	methyladenine glycosylase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	3.0	Os09g0414500	AK058840.1	-	ZF-HD homeobox protein	5e-3	At3g28917	MIF2 (MINI ZINC FINGER 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
54.1	99.9	GSM159173	Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
40.8	99.9	GSM159172	Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
28.0	99.6	GSM429985	Rice mutant phoenix (pho) panicle rep 2	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.9	98.1	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.8	97.6	GSM429984	Rice wild-type panicle rep2	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
7.2	97.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM429983	Rice mutant phoenix (pho) panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
6.6	97.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2	96.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0	96.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-12	75	Os04g0483500	AK060512.1	-	B-keto acyl reductase	1e+1	At5g44585	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	4e-7	57	Os06g0300000	AK109790.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	7e-1	At3g27280	ATPHB4 (PROHIBITIN 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	6e-6	54	Os02g0597900	CR290936	-	B-keto acyl reductase	7e-3	At1g24470	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	4e-4	48	Os06g0299300	AK060501.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	1e-6	56	Os06g0299100	AK066533.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	3e+0	At5g41908	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	6e-6	54	Os04g0116600	AK064965.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	4e+0	At2g20870	cell wall protein precursor, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2e-2	42	Os06g0299200	9634.m01889	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e+0	At5g65210	TGA1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-3	46	Os03g0855600	AK061467.1	-	Conserved hypothetical protein	6e-1	At3g42940	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	34	Arabidopsis thaliana	At4g31580	829285	SRZ-22	Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	PsAffx.CL288Contig1_at	PsAffx.CL288Contig1	-	-	2e+0	At1g15360	SHN1 (SHINE 1)	C.G.	S.X.	Please select
0.19	4e-47	188	Hordeum vulgare	Contig18689_at	Contig18689	-	-	1e+0	At3g56010	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	36	Populus trichocarpa	PtpAffx.214285.1.S1_at	pmrna27787	hypothetical protein	-	5e-6	At2g24590	splicing factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	7e-72	272	Triticum aestivum	Ta.25865.1.A1_at	CD453638	-	-	1e+0	At5g64590	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Vitis vinifera	1621424_at	CB979690	-	-	4e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	C.G.	S.X.	Please select
0.12	1e-9	63	Zea mays	Zm.351.1.S1_at	U89509.2	b-keto acyl reductase	-	5e-5	At1g24470	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage