CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0295900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os11g0295900 9639.m01770 - Pathogenesis-related transcriptional factor andERF domain containing protein 1e-5 At5g65510 AIL7 (AINTEGUMENTA-like 7) S.X. H.G.
0.80 94.6 Os01g0667400 AK064236.1 - Conserved hypothetical protein 2e-1 At3g18880 ribosomal protein S17 family protein S.X. H.G.
0.77 93.1 Os06g0657500 AK101959.1 - ANT (Ovule development protein aintegumenta) 3e-10 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) S.X. H.G.
0.77 93.1 Os01g0939300 AK101079.1 - BRCT domain containing protein 2e-8 At3g21480 - S.X. H.G.
0.73 91.1 Os01g0369200 AK073477.1 - Cullin family protein 3e-4 At1g02980 CUL2 (CULLIN 2) S.X. H.G.
0.59 78.0 Os06g0520600 AK101510.1 - Eukaryotic initiation factor-like protein 1e+0 At5g03837 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
142.9 100.0 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
30.0 99.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.6 99.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 2e-70 268 Os02g0614300 AK112070.1 - ANT (Ovule development protein aintegumenta) 5e-20 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.26 1e-66 256 Os01g0899800 9629.m06698 - ANT (Ovule development protein aintegumenta) 6e-30 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.15 2e-28 129 Os04g0653600 AK059064.1 - AP2/EREBP transcription factor BABY BOOM1 3e+0 At2g21330 fructose-bisphosphate aldolase, putative C.G. S.X.
0.12 3e-14 81 Os06g0657500 AK101959.1 - ANT (Ovule development protein aintegumenta) 3e-10 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
0.12 1e-13 79 Os03g0232200 AK106306.1 - BABY BOOM 3e-26 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.03 1e-7 59 Os06g0658000 9634.m04338 - - 3e-1 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-5 52 Arabidopsis thaliana At5g65510 836677 AIL7 (AINTEGUMENTA-like 7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB - - - C.G. S.X.
0.23 4e-31 137 Glycine max GmaAffx.83598.1.S1_at BU964918 PLETHORA 2 - 2e-112 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.05 2e-3 44 Hordeum vulgare Contig15309_at Contig15309 - - 1e-2 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.32 7e-67 256 Populus trichocarpa PtpAffx.209236.1.S1_x_at pmrna18264 AP2 domain-containing transcription factor - 2e-17 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.08 2e-5 52 Triticum aestivum TaAffx.64176.1.S1_at BJ312281 - - 8e-11 At1g72570 DNA binding / transcription factor C.G. S.X.
0.05 1e-6 54 Vitis vinifera 1610205_at CF510900 hypothetical protein LOC100252316 - 4e-34 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.14 2e-9 63 Zea mays Zm.123.1.S1_at AY109146.1 heat shock complementing factor1 - 2e-5 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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