CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0258900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os11g0258900 AK102638.1 - Conserved hypothetical protein 9e-1 At5g38760 unknown protein S.X. H.G.
0.50 68.0 Os01g0210100 NM_197507.1 - - 2e+0 At5g38760 unknown protein S.X. H.G.
0.50 68.0 Os01g0840900 AK063699.1 - Hypothetical protein 2e-1 At1g71090 auxin efflux carrier family protein S.X. H.G.
0.36 44.0 Os08g0158800 AK107200.1 - Hypothetical protein 2e-1 At1g44191 - S.X. H.G.
0.29 31.1 Os11g0307600 AK070683.1 - Conserved hypothetical protein 2e-2 At2g44390 DC1 domain-containing protein S.X. H.G.
0.20 16.5 Os03g0158700 AK071242.1 - - 9e+0 At4g24060 Dof-type zinc finger domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.7 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.2 99.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.9 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7 99.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 0 688 Os08g0561800 AK119834.1 - Conserved hypothetical protein 2e-1 At1g11850 unknown protein C.G. S.X.
0.40 1e-109 398 Os12g0166700 AK071570.1 - Conserved hypothetical protein 6e-2 At1g54215 proline-rich family protein C.G. S.X.
0.40 6e-90 333 Os07g0676800 AK061062.1 - Conserved hypothetical protein 8e-1 At1g04778 unknown protein C.G. S.X.
0.39 2e-89 331 Os06g0234700 AK103533.1 - Conserved hypothetical protein 7e-1 At3g50250 unknown protein C.G. S.X.
0.37 2e-117 424 Os12g0239300 AK067904.1 - Conserved hypothetical protein 9e-1 At1g72430 auxin-responsive protein-related C.G. S.X.
0.37 1e-109 398 Os05g0429100 AK100059.1 - Conserved hypothetical protein 1e-2 At2g17110 unknown protein C.G. S.X.
0.19 1e-106 389 Os08g0293100 AK071000.1 - Conserved hypothetical protein 4e-1 At4g17585 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Arabidopsis thaliana At5g38760 833867 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PF - - - C.G. S.X.
0.02 3e-1 38 Glycine max Gma.13520.1.A1_at CD399653 - - 3e+0 At5g51860 MADS-box protein (AGL72) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig324_at Contig324 - - 1e-74 At3g11510 40S ribosomal protein S14 (RPS14B) C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.221733.1.S1_s_at pmrna38769 hypothetical protein - 8e-5 At1g32730 unknown protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.113428.1.S1_at CA612725 - - 9e-1 At1g15790 unknown protein C.G. S.X.
0.03 1e+0 34 Vitis vinifera 1613045_at CB971007 hypothetical protein LOC100243125 - 7e-2 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 2e-3 44 Zea mays Zm.17696.1.A1_at BM073027 - - 2e-3 At4g31470 pathogenesis-related protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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