Gene omics information

Query gene ID	Os11g0221000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	97.1	Os11g0221000	AK102073.1	-	Hypothetical protein	4e-4	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os09g0363900	AK072899.1	-	Mandelonitrile lyase-like protein	1e-3	At1g72970	HTH (HOTHEAD)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os04g0649200	AK103112.1	-	Plant protein of unknown function DUF869 familyprotein	4e-4	At2g23360	transport protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os04g0517000	AK101663.1	-	Conserved hypothetical protein	3e-2	At1g11700	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os01g0756600	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.58	77.0	Os01g0531400	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os06g0478600	AK064086.1	-	Leucine-rich repeat, plant specific containingprotein	9e-1	At5g01380	transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os01g0326000	AK061371.1	-	Peroxidase 1	2e-1	At1g44970	peroxidase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	Os05g0406800	AK062566.1	-	Leucine-rich repeat, plant specific containingprotein	2e-2	At3g53235	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os07g0205500	AK103449.1	-	Protein of unknown function DUF239 domaincontaining protein	8e-23	At3g13510	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.5	99.9	GSM429984	Rice wild-type panicle rep2	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
28.8	99.6	GSM429983	Rice mutant phoenix (pho) panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
21.8	99.2	GSM429982	Rice wild-type panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
14.4	98.6	GSM409427	Nipponbare_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.5	98.2	GSM99881	TCHW P23_ir29 salt stress, biological rep2	GSE4438	Expression data from rice under salinity stress
10.6	98.1	GSM99866	TCHW P9_ir29 control, biological rep3	GSE4438	Expression data from rice under salinity stress
10.0	98.0	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.0	97.8	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.7	97.8	GSM409434	9311_young panicle 2cm, biological rep5	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.4	97.7	GSM99861	TCHW P4_m103 salt stress, biological rep1	GSE4438	Expression data from rice under salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-3	46	Os01g0769000	AK100439.1	-	-	1e-10	At3g22270	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-3	46	Os05g0230700	AK106192.1	-	Auxin-responsive protein IAA2 (Indoleaceticacid-induced protein 2)	5e-14	At2g22670	IAA8	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	44	Os01g0802600	9629.m05777	-	Circadian clock coupling factor ZGT	4e-1	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-4	48	Arabidopsis thaliana	At3g23050	821879	IAA7 (INDOLE-3-ACETIC ACID 7)	Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	6e-4	48	Glycine max	GmaAffx.3983.1.A1_s_at	AW349138	-	-	9e-1	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.01	5e-2	40	Hordeum vulgare	Contig2504_at	Contig2504	-	-	2e-10	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.02	2e-3	46	Populus trichocarpa	PtpAffx.147698.1.A1_at	CV228351	-	-	1e-7	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	4e-1	38	Triticum aestivum	TaAffx.78940.1.S1_at	CA724277	-	-	3e+0	At2g31018	unknown protein	C.G.	S.X.	Please select
0.02	3e-5	50	Vitis vinifera	1617680_at	CD715051	-	-	2e-8	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	C.G.	S.X.	Please select
0.02	2e-1	38	Zea mays	ZmAffx.832.1.S1_at	AI770560	hypothetical protein LOC100274340	-	5e-2	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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