CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0170900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os11g0170900 AK067523.1 - Conserved hypothetical protein 1e+0 At3g63080 ATGPX5 (glutathione peroxidase 5) S.X. H.G.
0.40 51.1 Os09g0451400 AK058296.1 - 1-aminocyclopropapne-1-carboxylic acid oxidase 4e-12 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative S.X. H.G.
0.25 24.1 Os11g0653300 AK119392.1 - Hypothetical protein 3e-2 At3g21710 unknown protein S.X. H.G.
0.22 19.4 Os02g0243300 AK105563.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 4e-6 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) S.X. H.G.
0.22 19.4 Os12g0561900 AK121202.1 - Conserved hypothetical protein 9e-1 At1g02813 unknown protein S.X. H.G.
0.09 4.9 Os11g0289700 AK065302.1 - E-class P450, group I family protein 4e+0 At5g56075 ATP binding / nucleotide binding / phenylalanine-tRNA ligase S.X. H.G.
0.09 4.9 Os08g0137400 AK066535.1 - Plastocyanin-like domain containing protein 1e-1 At2g20760 protein binding / structural molecule S.X. H.G.
0.07 3.7 Os10g0150800 AK061299.1 - Protein of unknown function DUF1210 family protein 2e+0 At5g14340 AtMYB40 (myb domain protein 40) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.6 98.7 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
15.2 98.7 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
13.9 98.5 GSM304669 Control for the stable mutant rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
13.4 98.5 GSM304664 Control for the stable mutant rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.7 98.4 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
11.5 98.2 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
11.0 98.2 GSM154960 Leaf_OsRR6-overexpressor_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
11.0 98.2 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
9.7 98.0 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.3 97.9 GSM304671 Unstable mutant line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 6e-90 333 Os04g0225700 9632.m01377 - BURP domain containing protein 1e-1 At5g25610 RD22 C.G. S.X.
0.10 9e-6 54 Os01g0733500 AK065358.1 - Dehydration-responsive protein RD22 precursor 1e-8 At5g25610 RD22 C.G. S.X.
0.04 8e-3 44 Os08g0496800 AK120942.1 - RAFTIN1a protein (RAFTIN1a anther protein) 2e-1 At5g19875 unknown protein C.G. S.X.
0.02 8e-3 44 Os05g0215000 AK119543.1 - BURP domain containing protein 1e+1 At3g20600 NDR1 (non race-specific disease resistance 1) C.G. S.X.
0.02 5e-1 38 Os06g0302000 AK106070.1 - Hypothetical protein 3e+0 At1g06475 unknown protein C.G. S.X.
0.01 3e-2 42 Os03g0587700 9631.m03752 - - 7e-1 At3g28590 unknown protein C.G. S.X.
0.01 5e-1 38 Os06g0281800 AK064437.1 - BURP domain containing protein 1e-2 At5g25610 RD22 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At3g63080 825483 ATGPX5 (glutathione peroxidase 5) Encodes glutathione peroxidase. - - - C.G. S.X.
0.01 2e+0 36 Glycine max GmaAffx.11948.1.S1_at AW459026 - - 2e-7 At1g64355 unknown protein C.G. S.X.
0.15 9e-9 61 Hordeum vulgare Contig7629_at Contig7629 - - 3e-6 At5g25610 RD22 C.G. S.X.
0.01 9e-2 40 Populus trichocarpa PtpAffx.77784.1.A1_at CK094739 - - 5e+0 At4g29510 PRMT11 (ARGININE METHYLTRANSFERASE 11) C.G. S.X.
0.08 2e-8 61 Triticum aestivum Ta.28209.1.S1_a_at CK209443 - - 3e+0 At4g00120 IND (INDEHISCENT) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1610940_at CA818567 hypothetical protein LOC100252455 - 2e-6 At5g52900 unknown protein C.G. S.X.
0.10 8e-9 61 Zea mays Zm.7393.1.A1_at CF646803 hypothetical protein LOC100194238 - 6e+0 At5g25610 RD22 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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