CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0162200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.76 92.2 Os11g0162200 AK060396.1 - - 3e-7 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative S.X. H.G.
0.78 93.4 Os07g0585800 AK105064.1 - NADH-ubiquinone oxidoreductase 18 kDa subunit (EC1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD)(Fragment) 7e-9 At5g67590 FRO1 (FROSTBITE1) S.X. H.G.
0.75 91.9 Os08g0431500 AK058993.1 - Conserved hypothetical protein 3e-20 At4g16450 unknown protein S.X. H.G.
0.67 87.2 Os07g0222800 AK100823.1 - Acyl carrier protein, mitochondrial precursor(ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit)(MtACP-1) 1e-1 At2g44620 MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1) S.X. H.G.
0.67 87.2 Os03g0390400 AB025187.1 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 7e-37 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) S.X. H.G.
0.64 83.4 Os04g0418000 AK106155.1 - Conserved hypothetical protein 6e-1 At1g47420 - S.X. H.G.
0.64 83.4 Os12g0169700 AK103904.1 - Ferripyochelin-binding protein-like 8e-16 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) S.X. H.G.
0.56 76.3 Os05g0301700 AK070578.1 - Cytochrome c1 (Fragment) 5e-79 At3g27240 cytochrome c1, putative S.X. H.G.
0.50 68.0 Os08g0556600 AK121358.1 - Conserved hypothetical protein 2e-8 At3g62790 NADH-ubiquinone oxidoreductase-related S.X. H.G.
0.34 40.0 Os07g0495200 AK070990.1 - ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14) 1e-1 At5g47030 ATP synthase delta' chain, mitochondrial S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 96.0 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.5 95.3 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.3 95.1 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
3.2 94.9 GSM359920 Pokkali root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.1 94.8 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
3.1 94.8 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.1 94.8 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.0 94.6 GSM359921 Pokkali root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.0 94.6 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.0 94.6 GSM359919 Pokkali root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Os06g0552300 AK101229.1 - Plant protein of unknown function DUF822 familyprotein 5e-8 At1g78700 brassinosteroid signalling positive regulator-related C.G. S.X.
0.02 2e+0 34 Os12g0607200 9640.m04054 - - 4e-2 At2g21780 unknown protein C.G. S.X.
0.01 1e-1 38 Os02g0827300 AK069159.1 - Protein of unknown function DUF382 domaincontaining protein 7e-36 At4g21660 proline-rich spliceosome-associated (PSP) family protein C.G. S.X.
0.01 6e-1 36 Os03g0413400 BX899056 - Glycosyl transferase, family 8 protein 2e-1 At2g22640 BRK1 (BRICK1) C.G. S.X.
0.01 6e-1 36 Os09g0551900 9637.m03231 - ATP-binding region, ATPase-like domain containingprotein 1e-1 At4g18800 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) C.G. S.X.
0.01 2e+0 34 Os06g0721600 9634.m04931 - Protein of unknown function DUF544 family protein 4e-1 At4g34720 AVA-P1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 3e-7 56 Arabidopsis thaliana At1g15120 838075 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III;MPOF - - - C.G. S.X.
0.08 2e-15 83 Glycine max Gma.7569.1.S1_at CD413554 - - 4e-26 At2g01090 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative C.G. S.X.
0.34 3e-58 224 Hordeum vulgare Contig7618_at Contig7618 - - 3e-10 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative C.G. S.X.
0.06 4e-7 56 Populus trichocarpa PtpAffx.42648.1.S1_at CV260478 hypothetical protein - 7e-27 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative C.G. S.X.
0.30 2e-55 216 Triticum aestivum Ta.12748.2.S1_x_at CK212529 - - 9e-11 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative C.G. S.X.
0.16 2e-8 57 Vitis vinifera 1617827_at BQ792603 hypothetical protein LOC100253774 - 2e-8 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative C.G. S.X.
0.26 5e-35 147 Zea mays Zm.10640.1.S1_at AY107547.1 - - 2e-5 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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