CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0160400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os11g0160400 AK109030.1 - Hypothetical protein 4e-2 At3g53650 histone H2B, putative S.X. H.G.
0.67 87.2 Os12g0218800 AK107720.1 - Hypothetical protein 2e-5 At3g50550 unknown protein S.X. H.G.
0.60 79.7 Os12g0218300 AK063060.1 - Hypothetical protein 3e-1 At3g48208 - S.X. H.G.
0.50 68.0 Os03g0762400 AK071181.1 - Peroxidase precursor (EC 1.11.1.7) 1e-5 At5g67400 peroxidase 73 (PER73) (P73) (PRXR11) S.X. H.G.
0.44 58.1 Os10g0569600 BQ529575 - RIR1b protein precursor 1e+0 At2g25344 LCR14 (Low-molecular-weight cysteine-rich 14) S.X. H.G.
0.31 34.5 Os11g0112200 AK108385.1 - Cationic peroxidase 1 precursor (EC 1.11.1.7)(PNPC1) 4e-8 At1g68850 peroxidase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
171.1 100.0 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
127.2 100.0 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.0 98.0 GSM262001 IAC165, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.3 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.9 96.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.1 96.0 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.9 95.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM262009 IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.8 95.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-3 44 Os02g0551700 AK106428.1 - Protein of unknown function DUF668 family protein 8e-1 At1g34320 unknown protein C.G. S.X.
0.01 2e-2 42 Os07g0187400 9635.m00855 - AAA ATPase domain containing protein 4e-34 At3g10420 sporulation protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 Arabidopsis thaliana At3g53650 824533 histone H2B, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.66307.1.S1_at BM309319 - - 9e-4 At2g02880 mucin-related C.G. S.X.
0.02 7e-2 38 Hordeum vulgare Contig79_at Contig79 - - 1e-1 At4g08230 glycine-rich protein C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.219425.1.S1_at pmrna35346 hypothetical protein - 7e-1 Atmg01100 - C.G. S.X.
0.03 4e-2 40 Triticum aestivum Ta.26894.1.A1_at CD491609 - - 4e+0 At1g23660 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1612884_at CA810969 - - 4e+0 At3g24513 - C.G. S.X.
0.03 4e-3 42 Zea mays Zm.15210.1.A1_at BM269011 ARR1 protein-like - 1e-3 At5g59570 myb family transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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