CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0142400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os11g0142400 AK067423.1 - Strictosidine synthase family protein 1e-2 At2g41290 strictosidine synthase family protein S.X. H.G.
0.67 87.2 Os09g0426800 AK120227.1 - Gl1 protein 3e-1 At4g12950 - S.X. H.G.
0.63 82.7 Os04g0528300 AK064945.1 - ABC transporter related domain containing protein 2e-12 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) S.X. H.G.
0.46 60.9 Os07g0510400 AK119544.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) S.X. H.G.
0.46 60.9 Os12g0411700 BI806808 - ABC transporter related domain containing protein 9e-1 At1g60660 CB5LP (CYTOCHROME B5-LIKE PROTEIN) S.X. H.G.
0.25 24.1 Os05g0584300 AK063149.1 - Harpin-induced 1 domain containing protein 5e-1 At1g01640 speckle-type POZ protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.4 99.2 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
12.3 98.3 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
11.1 98.2 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
10.5 98.1 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
9.9 98.0 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
9.6 97.9 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.9 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
6.7 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM421703 XOO, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-100 369 Os03g0650200 9631.m04325 - Cytochrome P450 family protein 9e-1 At5g63400 ADK1 (ADENYLATE KINASE 1) C.G. S.X.
0.08 1e-70 270 Os05g0397300 AK062621.1 - Conserved hypothetical protein 1e+0 At5g28610 - C.G. S.X.
0.06 4e-98 361 Os03g0267100 AK120655.1 - Conserved hypothetical protein 6e-16 At3g46230 ATHSP17.4 C.G. S.X.
0.06 2e-72 276 Os08g0483200 AK068161.1 - - 2e-3 At2g23320 WRKY15 C.G. S.X.
0.02 5e-4 48 Os03g0750700 AK111876.1 - Strictosidine synthase family protein 9e-4 At1g08470 strictosidine synthase family protein C.G. S.X.
0.02 3e-2 42 Os11g0184900 AB028184.1 - OsNAC5 protein 6e-2 At5g08790 ATAF2 C.G. S.X.
0.01 7e-3 44 Os10g0572100 AK073002.1 - Protein of unknown function UPF0005 family protein 3e-4 At5g46610 unknown protein C.G. S.X.
0.01 1e-1 40 Os09g0271000 AK102955.1 - Conserved hypothetical protein 2e+0 At5g55890 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 42 Arabidopsis thaliana At2g41290 818728 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOFA - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.21166.1.S1_at AW508334 - - 4e+0 At2g20140 26S protease regulatory complex subunit 4, putative C.G. S.X.
0.06 3e-2 40 Hordeum vulgare HV_CEa0015D14r2_at HV_CEa0015D14r2 - - 4e+0 At4g31750 WIN2 (HOPW1-1-INTERACTING 2) C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.218300.1.S1_at pmrna33866 hypothetical protein - 6e+0 Atmg00820 - C.G. S.X.
0.02 4e-3 44 Triticum aestivum Ta.3344.1.S1_at BJ253417 - - 3e-2 At1g08470 strictosidine synthase family protein C.G. S.X.
0.02 1e-3 44 Vitis vinifera 1615198_at CF209943 hypothetical protein LOC100262991 - 3e-1 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.02 4e-4 46 Zea mays Zm.14817.1.A1_at AI692070 hypothetical protein LOC100279996 - 3e-2 At5g64570 XYL4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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