CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0138900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.54 71.9 Os11g0138900 AK059449.1 - Esterase/lipase/thioesterase domain containingprotein 2e-1 At2g05510 glycine-rich protein S.X. H.G.
0.86 96.4 Os03g0150800 AY332471.1 - High affinity phosphate transporter 2 (Phosphatetransporter) 1e-12 At5g43340 PHT6 S.X. H.G.
0.73 91.1 Os07g0630400 AK060320.1 - Ribonuclease T2 family protein 2e+0 At3g22580 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.73 91.1 Os11g0557800 AK111347.1 - Hypothetical protein 5e+0 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) S.X. H.G.
0.64 83.4 Os07g0104500 AK108824.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e-1 At2g20080 unknown protein S.X. H.G.
0.63 82.7 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein S.X. H.G.
0.62 81.5 Os02g0157600 9630.m00558 - Rhodanese-like domain containing protein 6e+0 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) S.X. H.G.
0.60 79.7 Os05g0276500 U30479.1 - Expansin Os-EXPA3 5e-1 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) S.X. H.G.
0.57 77.0 Os04g0684300 AK105205.1 - Hypothetical protein 2e+1 Atcg00560 - S.X. H.G.
0.56 76.3 Os10g0323500 AK071372.1 - Beta-glucosidase 1e-6 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.5 99.3 GSM159179 Root, 7-day-old Seedling, biological rep 3 GSE6893 Expression data for reproductive development in rice
18.0 98.9 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
17.6 98.9 GSM359909 IR29 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
17.1 98.8 GSM159178 Root, 7-day-old Seedling, biological rep 2 GSE6893 Expression data for reproductive development in rice
16.7 98.8 GSM159177 Root, 7-day-old Seedling, biological rep 1 GSE6893 Expression data for reproductive development in rice
14.7 98.6 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.4 98.6 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
14.2 98.5 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.7 98.5 GSM359910 IR29 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.1 98.3 GSM359912 IR29 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 4e-16 87 Os12g0135800 AK061124.1 - - 3e-3 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) C.G. S.X.
0.10 1e-28 129 Os12g0135700 AK101030.1 - - 3e-3 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) C.G. S.X.
0.04 4e-16 87 Os05g0410100 AK108696.1 - Conserved hypothetical protein 1e+1 At5g14690 unknown protein C.G. S.X.
0.04 4e-16 87 Os05g0410200 AK072435.1 - - 8e-1 At5g03350 legume lectin family protein C.G. S.X.
0.03 4e-7 57 Os05g0407500 AK074026.1 - Esterase/lipase/thioesterase domain containingprotein 3e-1 At5g11600 unknown protein C.G. S.X.
0.03 4e-4 48 Os07g0643400 AK109437.2 - Esterase/lipase/thioesterase domain containingprotein 4e-2 At5g06570 hydrolase C.G. S.X.
0.03 4e-4 48 Os07g0643500 AK111373.1 - Conserved hypothetical protein 4e-2 At5g06570 hydrolase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At2g05510 815100 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA - - - C.G. S.X.
0.02 2e-2 42 Glycine max GmaAffx.71850.1.S1_at BE555706 - - 3e+0 At4g24310 unknown protein C.G. S.X.
0.05 1e-10 67 Hordeum vulgare Contig12649_at Contig12649 - - 7e-1 At1g42699 unknown protein C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.216930.1.S1_at pmrna32006 hypothetical protein - 3e+1 At5g29807 unknown protein C.G. S.X.
0.06 3e-9 63 Triticum aestivum Ta.29817.1.S1_x_at CK162633 - - 3e+1 At5g59950 RNA and export factor-binding protein, putative C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1613654_at CD720353 - - 3e-1 At1g78400 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 2e-2 40 Zea mays Zm.19022.1.S1_at CO526898 hypothetical protein LOC100273481 - 7e-1 At5g06570 hydrolase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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