CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0125900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.58 77.0 Os11g0125900 BX928842 - Nucleoside phosphatase GDA1/CD39 family protein 6e+0 At1g26450 beta-1,3-glucanase-related S.X. H.G.
0.50 68.0 Os07g0105900 AK059175.1 - NB-ARC domain containing protein 1e-2 At2g22430 ATHB6 S.X. H.G.
0.43 55.4 Os01g0123000 AK106806.1 - Retrofit 8e-1 At3g27210 unknown protein S.X. H.G.
0.38 46.9 Os07g0206900 AK107761.1 - Conserved hypothetical protein 1e+0 At4g18900 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.33 38.8 Os05g0454200 AK101945.1 - Protein of unknown function DUF315 domaincontaining protein 1e-15 At4g38430 ROPGEF1 S.X. H.G.
0.25 24.1 Os10g0159600 AK064267.1 - Heat shock protein Hsp20 domain containing protein 3e+0 At2g03680 SPR1 (SPIRAL1) S.X. H.G.
0.23 21.2 Os08g0433400 AK059468.1 - Myb, DNA-binding domain containing protein 2e-20 At3g01140 MYB106 (myb domain protein 106) S.X. H.G.
0.22 19.4 Os06g0123000 AK108643.1 - Hypothetical protein 8e+0 At2g47420 dimethyladenosine transferase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.0 99.9 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
23.1 99.3 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
22.8 99.3 GSM99865 TCHW P8_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
18.4 99.0 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
17.6 98.9 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
16.5 98.8 GSM99880 TCHW P22_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
14.5 98.6 GSM99868 TCHW P11_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
14.0 98.5 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
13.8 98.5 GSM99866 TCHW P9_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
12.2 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 8e-158 557 Os12g0123500 AK072692.1 - Apyrase precursor (EC 3.6.1.5) (ATP-diphosphatase)(Adenosine diphosphatase) (ADPase)(ATP-diphosphohydrolase) 2e-4 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) C.G. S.X.
0.39 8e-44 178 Os11g0126400 9639.m00234 - Nucleoside phosphatase GDA1/CD39 family protein 2e-1 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) C.G. S.X.
0.37 9e-93 341 Os11g0126800 AK059453.1 - Hypothetical protein 9e-2 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) C.G. S.X.
0.23 5e-45 182 Os12g0123600 AK100760.1 - Nucleoside-triphosphatase (EC 3.6.1.15)(Nucleoside triphosphate phosphohydrolase) (NTPase)(Apyrase) 4e+0 At3g46170 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.19 6e-29 129 Os11g0439600 AK069955.1 - Nod factor binding lectin-nucleotidephosphohydrolase 2e-1 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e+0 32 Arabidopsis thaliana At1g26450 839186 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA - - - C.G. S.X.
0.04 5e-1 36 Glycine max GmaAffx.62443.1.S1_at AW099879 - - 7e-1 At1g12470 Pep3/Vps18/deep orange family protein C.G. S.X.
0.27 4e-33 141 Hordeum vulgare Contig3332_at Contig3332 - - 2e-1 At3g21215 RNA-binding protein, putative C.G. S.X.
0.03 8e+0 32 Populus trichocarpa PtpAffx.80402.1.S1_at DN497813 - - 8e+0 At4g10970 unknown protein C.G. S.X.
0.24 2e-18 93 Triticum aestivum TaAffx.113232.1.S1_at CA617055 - - 1e+0 At1g70720 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1617644_at CF515515 - - 2e+1 At5g63230 - C.G. S.X.
0.03 2e-1 36 Zea mays Zm.7146.1.A1_at CF003899 30S ribosomal protein S17 /// hypothetical protein LOC100276656 - 3e-20 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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