CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0118400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os11g0118400 AK067579.1 - Hypothetical protein 4e-33 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related S.X. H.G.
0.67 87.2 Os07g0115200 AK111404.1 - Conserved hypothetical protein 3e+0 At3g57500 unknown protein S.X. H.G.
0.40 51.1 Os04g0466000 AK107738.1 - Conserved hypothetical protein 6e+0 At3g21950 methyltransferase S.X. H.G.
0.23 21.2 Os04g0494100 AB096140.1 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 1e-1 At2g43590 chitinase, putative S.X. H.G.
0.03 1.4 Os11g0132900 BI812638 - Protein kinase family protein 5e-3 At2g37050 kinase S.X. H.G.
0.01 0.5 Os06g0696600 AK105934.1 - Xyloglucan endo-transglycosylase homolog 9e-3 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
76.3 99.9 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
69.7 99.9 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
53.7 99.9 GSM304669 Control for the stable mutant rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
37.9 99.8 GSM304664 Control for the stable mutant rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM304671 Unstable mutant line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
10.4 98.1 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
10.0 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-73 278 Os12g0567300 AK107214.1 - Snapdragon myb protein 305 homolog 5e-14 At3g46130 MYB111 (MYB DOMAIN PROTEIN 111) C.G. S.X.
0.08 4e-78 293 Os07g0685600 AK121312.1 - Conserved hypothetical protein 6e-37 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related C.G. S.X.
0.05 1e-10 69 Os01g0780600 AK120823.1 - Photoreceptor-interacting protein-like(Non-phototropic hypocotyl-like protein) 5e-3 At5g66560 phototropic-responsive NPH3 family protein C.G. S.X.
0.04 1e-25 119 Os03g0347700 AK110492.1 - NPH3 domain containing protein 1e-9 At2g47860 phototropic-responsive NPH3 family protein C.G. S.X.
0.03 2e-6 56 Os04g0636500 AK109716.1 - NPH3 domain containing protein 3e-10 At5g03250 phototropic-responsive NPH3 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-33 143 Arabidopsis thaliana At1g16820 838253 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related F:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;PO - - - C.G. S.X.
0.11 6e-30 133 Glycine max GmaAffx.50193.1.S1_at BG881758 - - 5e-24 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related C.G. S.X.
0.16 2e-27 123 Hordeum vulgare EBem05_SQ004_F24_x_at EBem05_SQ004_F24 - - 2e-15 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related C.G. S.X.
0.14 3e-38 161 Populus trichocarpa PtpAffx.221944.1.S1_x_at pmrna39067 hypothetical protein - 5e-35 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related C.G. S.X.
0.15 3e-25 117 Triticum aestivum Ta.14791.1.S1_at CA682114 - - 4e-19 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1607408_at CF216013 - - 2e-1 At1g10720 BSD domain-containing protein C.G. S.X.
0.09 7e-27 121 Zea mays Zm.3413.1.S1_at CA827149 - - 9e-19 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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