CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0104900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os11g0104900 9639.m00033 - Clathrin heavy chain 9e-168 At3g11130 clathrin heavy chain, putative S.X. H.G.
0.60 79.7 Os10g0159600 AK064267.1 - Heat shock protein Hsp20 domain containing protein 3e+0 At2g03680 SPR1 (SPIRAL1) S.X. H.G.
0.56 76.3 Os03g0135200 AK059226.1 - Glutathione S-transferase GST 9 (EC 2.5.1.18) 2e+0 At4g10090 unknown protein S.X. H.G.
0.49 64.4 Os07g0105900 AK059175.1 - NB-ARC domain containing protein 1e-2 At2g22430 ATHB6 S.X. H.G.
0.49 64.4 Os07g0159700 9635.m00597 - Protein kinase domain containing protein 3e-2 At3g17420 GPK1 S.X. H.G.
0.48 63.7 Os07g0166700 AY332473.1 - Protein kinase domain containing protein 4e-1 At1g09483 unknown protein S.X. H.G.
0.46 60.9 Os02g0256100 AK059595.1 - Glycoside hydrolase, family 28 protein 1e-24 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.44 58.1 Os09g0450600 9637.m02442 - TB2/DP1 and HVA22 related protein family protein 4e+0 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) S.X. H.G.
0.40 51.1 Os10g0543800 AB103350.1 - Glutathione S-transferase 6e-1 At5g25940 early nodulin-related S.X. H.G.
0.36 44.0 Os03g0134900 AK102889.1 - Glutathione S-transferase GSTF14 (Fragment) 3e+0 At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.5 99.5 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
22.0 99.3 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
21.6 99.2 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
20.4 99.1 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
17.2 98.8 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
16.1 98.7 GSM67057 FL478 salt stressed replicate 3 GSE3053 Rice salt expression
15.4 98.7 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
13.2 98.4 GSM67061 IR29 salt stressed replicate 2 GSE3053 Rice salt expression
12.4 98.3 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
11.0 98.2 GSM67055 FL478 salt stressed replicate 1 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 38 Os06g0208100 AB101651.1 - Homeobox domain containing protein 3e-6 At4g00730 ANL2 (ANTHOCYANINLESS 2) C.G. S.X.
0.01 6e-1 38 Os08g0425800 AK061339.1 - Conserved hypothetical protein 2e+0 At5g63170 GDSL-motif lipase, putative C.G. S.X.
0.01 2e+0 36 Os07g0409300 NM_187790.1 - - 1e-1 At3g54990 SMZ (SCHLAFMUTZE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 9e-168 591 Arabidopsis thaliana At3g11130 820284 clathrin heavy chain, putative F:protein binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane, vacuole;MOFPB - - - C.G. S.X.
0.35 3e-122 440 Glycine max Gma.5822.1.S1_at U42608.1 clathrin heavy chain - 0 At3g08530 clathrin heavy chain, putative C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig22019_at Contig22019 - - 7e-1 At5g23405 high mobility group (HMG1/2) family protein C.G. S.X.
0.41 0 787 Populus trichocarpa PtpAffx.209272.1.S1_s_at pmrna18319 hypothetical protein - 0 At3g08530 clathrin heavy chain, putative C.G. S.X.
0.34 0 674 Triticum aestivum TaAffx.78576.1.S1_at CA730648 - - 2e-17 At3g11130 clathrin heavy chain, putative C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1620086_at BQ795852 - - 6e-27 At1g30630 coatomer protein epsilon subunit family protein / COPE family protein C.G. S.X.
0.19 1e-109 397 Zea mays ZmAffx.139.1.A1_at AI667769 - - 1e+1 At2g24200 cytosol aminopeptidase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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