CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0564800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 69.6 Os10g0564800 CA766884 - Calcium-binding EF-hand domain containing protein 7e-6 At5g47100 CBL9 S.X. H.G.
0.42 53.9 Os10g0397200 CA759319 - Winged helix DNA-binding domain containing protein 4e-1 Atcg01070 - S.X. H.G.
0.38 46.9 Os03g0852200 AK068059.1 - Der1-like domain containing protein 4e-30 At4g21810 DER2.1 (DERLIN-2.1) S.X. H.G.
0.35 41.7 Os01g0948300 AK102153.1 - Cellular retinaldehyde-binding)/triple function,C-terminal domain containing protein 9e+0 At3g30370 - S.X. H.G.
0.35 41.7 Os01g0507500 AK102891.1 - Conserved hypothetical protein 2e-1 At1g71080 unknown protein S.X. H.G.
0.32 36.3 Os01g0857700 AK066959.1 - Cell cycle control protein cwf14 2e-19 At4g21110 G10 family protein S.X. H.G.
0.31 34.5 Os06g0264300 AK061556.1 - UV excision repair protein Rad23 family protein 1e-12 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) S.X. H.G.
0.30 32.7 Os11g0433200 AK067867.1 - Peptidase A22B, minor histocompatibility antigenH13 family protein 5e-3 At1g01650 aspartic-type endopeptidase/ peptidase S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.3 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.1 96.0 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.5 95.3 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
3.4 95.2 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.1 94.8 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.1 94.8 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.1 94.8 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
3.1 94.8 GSM159212 Seed (S2, 3 - 4 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.1 94.8 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.1 94.8 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 9e-7 56 Os12g0597000 AK111887.1 - - 2e-69 At4g26570 ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) C.G. S.X.
0.06 6e-5 50 Os12g0162400 AK111505.1 - Calcineurin B-like protein 3 2e-65 At4g26570 ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) C.G. S.X.
0.06 3e-3 44 Os03g0626800 AK112092.1 - - 2e-50 At5g55990 CBL2 (CALCINEURIN B-LIKE 2) C.G. S.X.
0.03 1e-2 42 Os02g0291400 9630.m01799 - - 4e-4 At4g33000 CBL10 (CALCINEURIN B-LIKE 10) C.G. S.X.
0.02 8e-1 36 Os01g0589800 CR291996 - Conserved hypothetical protein 3e-17 At1g34000 OHP2 (ONE-HELIX PROTEIN 2) C.G. S.X.
0.01 1e-2 42 Os03g0448500 AK103628.1 - Calcineurin B-like protein 8 6e-4 At5g24270 SOS3 (SALT OVERLY SENSITIVE 3) C.G. S.X.
0.01 8e-1 36 Os01g0711200 AK107001.1 - Protein kinase domain containing protein 3e-1 At2g46090 diacylglycerol kinase family protein C.G. S.X.
0.01 8e-1 36 Os09g0363100 AK065958.1 - Protein of unknown function UPF0044 family protein 4e-4 At4g29750 RNA binding C.G. S.X.
0.01 8e-1 36 Os11g0528200 AK071810.1 - Conserved hypothetical protein 4e+0 At5g54067 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-6 52 Arabidopsis thaliana At5g47100 834756 CBL9 member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins. CBL9 interacts with and targets CIPK23 to the plasma membrane in vivo. - - - C.G. S.X.
0.03 4e-2 40 Glycine max GmaAffx.78968.1.S1_at BE820570 - - 2e-12 At5g39670 calcium-binding EF hand family protein C.G. S.X.
0.41 1e-159 561 Hordeum vulgare Contig10307_at Contig10307 - - 6e-4 At5g47100 CBL9 C.G. S.X.
0.11 6e-4 46 Populus trichocarpa PtpAffx.17551.1.S1_at CV230049 hypothetical protein - 3e-24 At4g17615 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) C.G. S.X.
0.49 5e-124 444 Triticum aestivum Ta.5272.2.S1_a_at BJ279781 - - 3e-4 At5g47100 CBL9 C.G. S.X.
0.32 2e-16 85 Vitis vinifera 1619634_at CF517717 hypothetical protein LOC100260894 /// hypothetical protein LOC100243294 /// hypothetical protein LOC100254976 - 7e-53 At4g17615 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) C.G. S.X.
0.33 2e-124 444 Zea mays Zm.5561.1.A1_at CF631787 calcineurin B-like protein - 8e-4 At5g47100 CBL9 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage