Gene omics information

Query gene ID	Os10g0554100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.1	Os10g0554100	AK071048.1	-	Oxysterol-binding protein family protein	8e-36	At2g31030	ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os03g0278300	AK071965.1	-	Transcriptional coactivator-like protein	6e-12	At5g02530	RNA and export factor-binding protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os01g0622600	CB642720	-	Calcium-dependent protein kinase	2e-23	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os03g0274000	AK060769.1	-	Oxysterol-binding protein family protein	1e-24	At5g02100	UNE18 (UNFERTILIZED EMBRYO SAC 18)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os01g0510100	CB656690	-	MAP kinase kinase 1	5e-30	At5g56580	MKK6 (MAP KINASE KINASE 6)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os08g0157900	AK065294.1	-	No apical meristem (NAM) protein domain containingprotein	6e-6	At5g18270	ANAC087	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	Os03g0280000	AK120269.1	-	ABC transporter, transmembrane region domaincontaining protein	2e-72	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	Os05g0511400	AK101120.1	-	Protein kinase GhCLK1 (Fragment)	3e-41	At4g14350	protein kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	97.9	GSM302918	leaf_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
8.5	97.7	GSM159184	Y Leaf, biological rep 2	GSE6893	Expression data for reproductive development in rice
7.8	97.6	GSM375767	gid1-3_ shoot_replicate 3	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
6.2	97.1	GSM375766	gid1-3_ shoot_replicate 2	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
6.1	97.1	GSM302919	leaf_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
6.0	97.0	GSM159189	Young inflorescence (P1, upto 3 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
5.7	96.9	GSM375765	gid1-3_ shoot_replicate 1	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
5.2	96.7	GSM173091	Rice OsSRT1 RNAi transgenic line LM1	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.1	96.6	GSM302921	root_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
4.8	96.5	GSM173086	Rice MH63 Control1	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-13	79	Os03g0704700	CA764876	-	Pleckstrin-like domain containing protein	5e-64	At2g31030	ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	1e-8	63	Os12g0285600	AK069104.1	-	Oxysterol-binding protein family protein	3e-26	At1g13170	ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	7e-10	67	Os08g0530000	AK065712.1	-	Uridine-cytidine kinase 2 (EC 2.7.1.48) (UCK 2)(Uridine monophosphokinase 2) (Cytidine monophosphokinase2)	5e-52	At3g27190	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-3	46	Os06g0574500	AK071838.1	-	Protein phosphatase 2A	5e-33	At1g10430	PP2A-2	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-5	52	Os05g0170000	AK100216.1	-	Arabidopsis protein of unknown function DUF266family protein	7e-8	At5g14550	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	44	Os01g0346700	AK071793.1	-	Conserved hypothetical protein	5e-4	At1g75550	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	8e-36	153	Arabidopsis thaliana	At2g31030	817654	ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)	F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-8	61	Glycine max	GmaAffx.78583.1.S1_at	BM891075	-	-	4e-57	At2g31030	ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)	C.G.	S.X.	Please select
0.24	4e-113	408	Hordeum vulgare	Contig14887_at	Contig14887	-	-	2e-2	At4g08180	ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)	C.G.	S.X.	Please select
0.21	4e-23	111	Populus trichocarpa	PtpAffx.225202.1.S1_x_at	pmrna44365	hypothetical protein	-	1e-99	At4g22540	ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	1e-102	375	Triticum aestivum	TaAffx.11684.1.S1_at	CA673847	-	-	7e-6	At4g08180	ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)	C.G.	S.X.	Please select
0.07	3e-14	79	Vitis vinifera	1612383_at	CF608082	hypothetical protein LOC100253994	-	2e-5	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	C.G.	S.X.	Please select
0.03	4e-2	40	Zea mays	Zm.16409.1.A1_at	CF623827	-	-	2e-2	At4g22540	ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0008202	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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