CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0553600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os10g0553600 9638.m03681 - Exostosin-like family protein 4e-2 At5g17760 AAA-type ATPase family protein S.X. H.G.
0.67 87.2 Os06g0145300 9634.m00452 - Transferase family protein 7e-1 At4g22520 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.67 87.2 Os08g0514000 9636.m04074 - Legume lectin, beta domain containing protein 3e-1 At4g02420 lectin protein kinase, putative S.X. H.G.
0.60 79.7 Os06g0141000 9634.m00409 - Monosaccharide transporter 2e-1 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter S.X. H.G.
0.35 41.7 Os05g0277800 NM_188584.1 - - 1e+1 At5g17220 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) S.X. H.G.
0.29 31.1 Os02g0218500 AK110965.1 - - 4e-3 At5g35380 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
133.5 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
85.8 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-25 117 Os08g0147100 9636.m00442 - - 5e-1 At4g30660 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.06 4e-16 87 Os03g0144500 AK122034.1 - The start codon is not identified. 1e-2 At2g20370 MUR3 (MURUS 3) C.G. S.X.
0.02 2e-9 65 Os10g0459600 AK110989.1 - Xyloglucan galactosyltransferase 6e-2 At4g13990 exostosin family protein C.G. S.X.
0.02 2e-9 65 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 40 Arabidopsis thaliana At5g17760 831644 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:plasma membrane;BOMFPAV - - - C.G. S.X.
0.02 2e-2 42 Glycine max HgAffx.20912.1.A1_at CK350619 - - 6e-2 At1g56420 unknown protein C.G. S.X.
0.04 9e-8 57 Hordeum vulgare HU05I15r_at HU05I15r - - 3e-1 At1g69840 band 7 family protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.260.1.A1_s_at BP935880 tubulin, beta chain - 2e-57 At5g44340 TUB4 C.G. S.X.
0.03 5e-2 40 Triticum aestivum Ta.9783.3.S1_x_at BJ285979 - - 4e+0 At2g21465 - C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1609981_at CF207945 hypothetical protein LOC100247386 - 2e-11 At5g20910 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 8e-2 38 Zea mays Zm.10125.3.A1_x_at BM381172 cytidine/deoxycytidylate deaminase family protein - 4e+0 At1g47265 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009987 Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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