Gene omics information

Query gene ID	Os10g0552800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os10g0552800	AK062381.1	-	RCc3 protein	9e-2	At2g25820	transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os02g0662000	AK109149.1	-	RCc3 protein	1e-1	At2g25820	transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os02g0658100	AB114830.1	-	Aquaporin TIP2.1 (Tonoplast intrinsic protein 2.1)(Delta-tonoplast intrinsic protein) (Delta-TIP)	7e-19	At3g16240	DELTA-TIP	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os02g0653200	AK062889.1	-	Cupredoxin domain containing protein	7e-3	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os02g0256200	AB110701.1	-	Conserved hypothetical protein	1e-1	At5g67060	HEC1 (HECATE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os01g0263300	AK102117.1	-	-	4e-8	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	98.2	GSM159272	Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
11.3	98.2	GSM275411	Azucena root tip_Buckled at the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
10.3	98.1	GSM262002	IAC165, 4 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.4	97.9	GSM275415	Azucena root tip_Before the wax layer_Rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
9.4	97.9	GSM154940	Root_DMSO-treatment_120min_replicate 2	GSE6719	Cytokinin responsive genes in rice
9.3	97.9	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
8.8	97.8	GSM159271	Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
8.8	97.8	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
8.5	97.7	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
8.3	97.7	GSM154939	Root_DMSO-treatment_120min_replicate 1	GSE6719	Cytokinin responsive genes in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	2e-118	426	Os10g0552700	AK063090.1	-	Tumor-related protein (Fragment)	2e+1	At5g67600	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.45	8e-118	424	Os10g0552600	AK062911.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	8e-50	198	Os04g0554500	AY466109.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At2g25820	transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	2e-50	200	Os02g0662000	AK109149.1	-	RCc3 protein	1e-1	At2g25820	transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	7e-35	149	Os03g0103200	AK062654.1	-	Physical impedance induced protein	1e+0	At1g12080	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	3e-34	147	Os10g0551800	L27209.1	-	Root-specific protein (RCc2 protein)	2e+0	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	5e-45	182	Os10g0552300	NM_197676.1	-	Root-specific protein (RCc2 protein)	4e+0	At5g16200	50S ribosomal protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	1e-39	165	Os10g0551900	AK102086.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-2	38	Arabidopsis thaliana	At2g25820	817124	transcription factor	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-2	40	Glycine max	GmaAffx.60984.1.S1_at	BU765206	-	-	2e-2	At4g12500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.29	5e-54	210	Hordeum vulgare	EBro04_SQ001_J04_at	EBro04_SQ001_J04	-	-	3e+0	At4g12550	AIR1	C.G.	S.X.	Please select
0.03	2e+0	34	Populus trichocarpa	PtpAffx.220384.1.S1_at	pmrna36763	hypothetical protein	-	6e-2	At3g28590	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	8e-61	234	Triticum aestivum	Ta.3193.1.S1_at	BQ838076	-	-	5e+0	At4g12550	AIR1	C.G.	S.X.	Please select
0.05	4e-1	34	Vitis vinifera	1616822_at	AF220196.1	proline-rich protein 1 /// proline rich protein 1	-	2e-1	At1g12100	lipid binding	C.G.	S.X.	Please select
0.27	6e-32	137	Zea mays	Zm.16311.1.A1_at	CF633255	-	-	5e+0	At2g40330	Bet v I allergen family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
C	GO:0006869	The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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