Gene omics information

Query gene ID	Os10g0552700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	91.9	Os10g0552700	AK063090.1	-	Tumor-related protein (Fragment)	2e+1	At5g67600	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os02g0542500	AK109859.1	-	-	5e-2	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os10g0552800	AK062381.1	-	RCc3 protein	9e-2	At2g25820	transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os01g0264400	NM_187993.1	-	Conserved hypothetical protein	2e-4	At3g10040	transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	Os03g0563600	AK122030.1	-	Peroxidase 56 precursor (EC 1.11.1.7) (AtperoxP56) (ATP33)	2e-1	At5g15180	peroxidase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	4.2	Os05g0135000	AK109054.1	-	-	6e-1	At5g51890	peroxidase	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2.5	Os10g0552600	AK062911.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At3g02190	60S ribosomal protein L39 (RPL39B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.3	98.9	GSM359906	FL478 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.7	98.8	GSM359903	FL478 root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.4	98.7	GSM149409	Rice Azucena 0ppm Arsenate (Control) Rep3	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
13.3	98.4	GSM359904	FL478 root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.2	98.4	GSM275415	Azucena root tip_Before the wax layer_Rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
12.6	98.4	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
12.6	98.4	GSM359905	FL478 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.9	98.3	GSM359902	FL478 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.8	98.3	GSM100440	Rice Azucena 0ppm Arsenate (Control) Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
10.4	98.1	GSM195226	Root	GSE7951	Genome-wide gene expression profiling of rice stigma

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	2e-118	426	Os10g0552800	AK062381.1	-	RCc3 protein	9e-2	At2g25820	transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	3e-104	379	Os10g0552600	AK062911.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	4e-45	182	Os04g0554500	AY466109.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At2g25820	transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	6e-41	169	Os02g0662000	AK109149.1	-	RCc3 protein	1e-1	At2g25820	transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	4e-36	153	Os03g0103200	AK062654.1	-	Physical impedance induced protein	1e+0	At1g12080	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	6e-38	159	Os10g0551900	AK102086.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	6e-41	169	Os10g0551800	L27209.1	-	Root-specific protein (RCc2 protein)	2e+0	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	1e-51	204	Os10g0552300	NM_197676.1	-	Root-specific protein (RCc2 protein)	4e+0	At5g16200	50S ribosomal protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g67600	836896	unknown protein	F:unknown;P:unknown;C:plasma membrane;MOPFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.C38000116_s_at	PsAffx.C38000116	-	-	2e-1	At5g15690	-	C.G.	S.X.	Please select
0.32	3e-49	194	Hordeum vulgare	EBro04_SQ001_J04_at	EBro04_SQ001_J04	-	-	3e+0	At4g12550	AIR1	C.G.	S.X.	Please select
0.05	4e-1	36	Populus trichocarpa	PtpAffx.218800.1.S1_at	pmrna34537	hypothetical protein	-	2e+1	Atmg01060	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	3e-32	139	Triticum aestivum	TaAffx.112541.1.S1_at	CA622922	-	-	2e+0	At4g16140	proline-rich family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1614617_at	CD801865	hypothetical protein LOC100251323	-	3e-7	At4g00752	UBX domain-containing protein	C.G.	S.X.	Please select
0.30	1e-66	252	Zea mays	Zm.2541.1.A1_at	CF629797	cortical cell-delineating protein	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
C	GO:0006869	The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage