CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0539900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os10g0539900 AK102640.1 - Sugar transporter family protein 1e-22 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) S.X. H.G.
0.60 79.7 Os01g0300200 AK099208.1 - ATP:citrate lyase 4e-121 At5g49460 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) S.X. H.G.
0.60 79.7 Os03g0854100 AK067615.1 - ARF GAP-like zinc finger-containing protein ZIGA2(Fragment) 4e-12 At2g35210 RPA (ROOT AND POLLEN ARFGAP) S.X. H.G.
0.44 58.1 Os08g0554900 AK072840.1 - Nonaspanin (TM9SF) family protein 2e-39 At5g10840 endomembrane protein 70, putative S.X. H.G.
0.25 24.1 Os03g0237000 AK064791.1 - Nonaspanin (TM9SF) family protein 3e-47 At1g14670 endomembrane protein 70, putative S.X. H.G.
0.18 13.7 Os02g0722300 AK064958.1 - Nonaspanin (TM9SF) family protein 6e-21 At4g12650 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 96.0 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
3.8 95.7 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.7 95.6 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
3.5 95.3 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.5 95.3 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
3.3 95.1 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
3.3 95.1 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
3.2 94.9 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
3.2 94.9 GSM99866 TCHW P9_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-38 163 Os02g0229400 AK120560.1 - - 7e-12 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
0.06 2e-7 59 Os11g0475600 9639.m02588 - Hexose transporter 1e-3 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
0.02 8e-7 57 Os09g0394500 CB680834 - General substrate transporter family protein 1e-1 At1g05030 hexose transporter, putative C.G. S.X.
0.01 2e-1 40 Os07g0582400 AF416867.1 - Sorbitol transporter 2e-5 At2g18480 mannitol transporter, putative C.G. S.X.
0.01 4e-1 38 Os06g0471100 CB632213 - Hypothetical protein 2e+0 At4g08691 unknown protein C.G. S.X.
0.01 4e-1 38 Os12g0517200 AK111513.1 - Ribosomal protein S10 family protein 1e-3 At3g22300 RPS10 (RIBOSOMAL PROTEIN S10) C.G. S.X.
0.01 2e+0 36 Os11g0475900 9639.m02592 - - 3e+0 Atcg00140 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-22 109 Arabidopsis thaliana At4g35300 829684 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plasma membrane, vacuole, membrane;BFMPOA - - - C.G. S.X.
0.16 2e-13 79 Glycine max Gma.8384.1.A1_at BG881817 - - 5e-4 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
0.52 0 1174 Hordeum vulgare Contig3479_at Contig3479 - - 4e-15 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
0.18 9e-9 63 Populus trichocarpa Ptp.6521.1.S1_at CV270263 hypothetical protein - 2e-7 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
0.40 0 841 Triticum aestivum Ta.2669.1.S1_a_at CK153809 - - 3e-13 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
0.08 6e-22 105 Vitis vinifera 1611615_at CF405714 hypothetical protein LOC100264011 - 4e-17 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
0.48 0 745 Zea mays Zm.8068.1.A1_at BM072816 hexose transporter - 6e-17 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
C GO:0008643 The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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