Gene omics information

Query gene ID	Os10g0539500
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	88.4	Os10g0539500	AK119699.1	-	Histone H4	6e-24	At5g59690	histone H4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os01g0147900	M87064.1	-	Triosephosphate isomerase, cytosolic (EC 5.3.1.1)(TIM) (Triose- phosphate isomerase)	1e-23	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.69	87.9	Os03g0670700	AK119242.1	-	Glycine-rich RNA-binding protein GRP1A	2e-6	At4g39260	GR-RBP8	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.68	87.5	Os06g0130900	D10965.1	-	Histone H3.3	1e-3	At4g40030	histone H3.2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0121300	L29470.1	-	Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein)	9e-12	At4g38740	ROC1 (ROTAMASE CYP 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.64	83.4	Os06g0681400	U37687.1	-	Polyubiquitin	1e-160	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os06g0152100	AK121519.1	-	Profilin 2	8e-15	At2g19760	PRF1 (PROFILIN 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.52	69.6	Os03g0177500	D63583.1	-	EF-1 alpha	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os08g0366100	AK120339.1	-	EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment)	6e-11	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.49	64.4	Os02g0519900	AK100313.1	-	Elongation factor EF-2 (Fragment)	0	At1g56070	LOS1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	95.9	GSM159194	Inflorescence (P2, 3 - 5 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
3.5	95.3	GSM159193	Inflorescence (P2, 3 - 5 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice
2.6	93.8	GSM429983	Rice mutant phoenix (pho) panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
2.6	93.8	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.5	93.6	GSM429982	Rice wild-type panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
2.4	93.3	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.3	93.0	GSM159260	7-day-old Seedling, biological rep 2	GSE6901	Expression data for stress treatment in rice seedlings
2.3	93.0	GSM429984	Rice wild-type panicle rep2	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
2.2	92.7	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.2	92.7	GSM281586	Rice mutant dst, biological rep1	GSE11175	Comparison of transcriptome profile between wild-type and dst mutant plants

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	5e-137	488	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	6e-152	537	Os05g0462700	AK105816.1	-	Histone H4 variant TH011	6e-24	At5g59690	histone H4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	2e-148	525	Os05g0466600	AK119240.1	-	-	7e-18	At5g59690	histone H4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-4	48	Os01g0274800	AK107461.1	-	The start codon is not identified.	2e-7	At1g26780	myb family transcription factor (MYB117)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	6e-4	46	Os01g0948900	AK100932.1	-	Ankyrin repeat containing protein	2e-8	At3g57130	BOP1 (BLADE ON PETIOLE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	6e-24	111	Arabidopsis thaliana	At5g59690	836090	histone H4	F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.50	1e-66	254	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.52	1e-131	468	Hordeum vulgare	Contig160_s_at	Contig160	-	-	2e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.35	3e-23	109	Populus trichocarpa	PtpAffx.104205.1.A1_at	CV277856	-	-	1e-25	At5g59690	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	2e-135	482	Triticum aestivum	Ta.10329.27.S1_at	BJ219603	-	-	6e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.43	8e-27	119	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select
0.48	6e-127	452	Zea mays	Zm.6721.12.A1_s_at	BG265991	Histone H4	-	6e-18	At1g07660	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0051276	A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.
L	GO:0006334	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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