Gene omics information

Query gene ID Os10g0524900
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5573.7Os10g05249009638.m03422--3e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)S.X.H.G.
0.9299.1Os10g0399600NM_196369.1--9e-1At3g25099unknown proteinS.X.H.G.
0.9299.1Os12g05594009640.m03616-Pib5e+0At5g57655xylose isomerase family proteinS.X.H.G.
0.8395.8Os09g02721009637.m00753--4e+0At3g45000VPS24.2S.X.H.G.
0.6787.2Os10g03498009638.m01734--1e+1At5g19090heavy-metal-associated domain-containing proteinS.X.H.G.
0.6787.2Os12g02062009640.m00984--5e+0At5g53592-S.X.H.G.
0.5777.0Os06g05997009634.m03815--2e+0At5g23100unknown proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
209.3100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in Musa
182.7100.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in Musa
3.395.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.395.1GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in Musa
2.794.1GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.493.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.393.0GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.292.7GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.092.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
1.991.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.294e-48192Os04g02591009632.m01700--1e-1At4g08230glycine-rich proteinC.G.S.X.
0.232e-31137Os08g05178009636.m04110-Thaumatin, pathogenesis-related family protein6e-4At4g38670pathogenesis-related thaumatin family proteinC.G.S.X.
0.152e-1997Os01g0270700NM_188051.1-Phosphatidylinositol 3- and 4-kinase domaincontaining protein7e-1At2g24060translation initiation factor 3 (IF-3) family proteinC.G.S.X.
0.101e-1481Os01g0685300AK110519.1-Hypothetical protein3e+0At3g15680zinc finger (Ran-binding) family proteinC.G.S.X.
0.092e-1067Os07g05955509635.m04039--3e-3At2g21060ATGRP2B (GLYCINE-RICH PROTEIN 2B)C.G.S.X.
0.072e-1997Os09g0498200AK072354.1-Conserved hypothetical protein3e-7At1g75050-C.G.S.X.
0.061e-1481Os01g0685200NM_192084.1-Conserved hypothetical protein9e-21At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-136Arabidopsis thalianaAt2g21660816705CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).---C.G.S.X.
0.077e-652Glycine maxGma.11336.1.S1_atAI442808--5e-3At1g73620thaumatin-like protein, putative / pathogenesis-related protein, putativeC.G.S.X.
0.046e-444Hordeum vulgareContig10686_s_atContig10686--4e-8At4g24180-C.G.S.X.
0.042e+034Populus trichocarpaPtpAffx.222039.1.S1_atpmrna39237hypothetical protein-1e+0At2g45400BEN1C.G.S.X.
0.063e-446Triticum aestivumTaAffx.32415.1.S1_atCA595349--1e-3At1g75030ATLP-3C.G.S.X.
0.059e-856Vitis vinifera1612160_atCF415249hypothetical LOC100261232-1e-13At1g18250ATLP-1C.G.S.X.
0.041e-136Zea maysZm.7361.1.A1_atAY108454.1hypothetical protein LOC100272701-6e-1At5g54360zinc finger (C2H2 type) family protein-relatedC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage