CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0524600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.85 96.1 Os10g0524600 AK069238.1 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 8e-2 At4g00230 XSP1 (xylem serine peptidase 1) S.X. H.G.
0.45 58.8 Os04g0671900 AK071455.1 - Auxin response factor 8 3e-45 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) S.X. H.G.
0.42 53.9 Os09g0456100 AK072474.1 - Remorin, C-terminal region domain containingprotein 4e-1 At4g24430 lyase S.X. H.G.
0.34 40.0 Os03g0266800 AK100780.1 - Protein kinase domain containing protein 7e-27 At1g31420 FEI1 (FEI 1) S.X. H.G.
0.33 38.8 Os02g0219700 9630.m01160 - CD9/CD37/CD63 antigen family protein 4e-1 At5g60220 TET4 (TETRASPANIN4) S.X. H.G.
0.33 38.8 Os04g0615000 AK064014.1 - Hypothetical protein 2e-12 At5g45030 catalytic S.X. H.G.
0.32 36.3 Os03g0833800 AK066209.1 - Glycoside hydrolase, family 28 protein 1e-3 At3g62110 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.32 36.3 Os01g0195200 AK105501.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 3e-10 At2g20300 ALE2 (Abnormal Leaf Shape 2) S.X. H.G.
0.30 32.7 Os02g0200800 AB118005.1 - Targeting for Xklp2 family protein 6e-8 At4g32330 - S.X. H.G.
0.30 32.7 Os01g0741200 AU030308 - Protein kinase domain containing protein 1e-9 At1g51940 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.3 99.5 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
18.4 99.0 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
14.8 98.6 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
13.8 98.5 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
11.1 98.2 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
11.0 98.2 GSM67055 FL478 salt stressed replicate 1 GSE3053 Rice salt expression
9.9 98.0 GSM67057 FL478 salt stressed replicate 3 GSE3053 Rice salt expression
8.9 97.8 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
8.2 97.7 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
8.1 97.7 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 0 850 Os03g0119300 AK069220.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 3e-1 At4g00230 XSP1 (xylem serine peptidase 1) C.G. S.X.
0.14 5e-11 71 Os04g0559000 9632.m04551 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e-3 At3g14067 subtilase family protein C.G. S.X.
0.12 3e-12 75 Os05g0368700 AK064686.1 - Subtilase family protein 2e-6 At1g01900 SBTI1.1 C.G. S.X.
0.08 4e-8 61 Os03g0430500 9631.m03111 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e+0 At5g60460 sec61beta family protein C.G. S.X.
0.06 7e-7 57 Os04g0430700 AK105112.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e+0 At3g15356 legume lectin family protein C.G. S.X.
0.04 3e-9 65 Os07g0685900 AK119348.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 3e-1 At5g59810 SBT5.4 C.G. S.X.
0.04 3e-6 56 Os09g0479900 9637.m02699 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 1e-2 At5g59810 SBT5.4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-2 40 Arabidopsis thaliana At4g00230 827949 XSP1 (xylem serine peptidase 1) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:cell wall, plant-type cell wall;BPOFMA - - - C.G. S.X.
0.02 5e-4 48 Glycine max Gma.13089.3.S1_at BF067671 - - 3e-5 At5g67360 ARA12 C.G. S.X.
0.38 1e-106 387 Hordeum vulgare Contig12417_at Contig12417 - - 2e+0 At2g03630 unknown protein C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.225506.1.S1_at pmrna44897 hypothetical protein - 1e-6 At5g03620 subtilase family protein C.G. S.X.
0.50 1e-142 508 Triticum aestivum Ta.10200.2.S1_at CA647779 - - 3e+0 At2g35345 unknown protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1615453_at BQ793001 hypothetical protein LOC100259013 - 1e+0 At5g42567 - C.G. S.X.
0.45 5e-100 365 Zea mays Zm.4432.1.A1_at CF626711 hypothetical protein LOC100274260 - 4e+0 At2g20570 GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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