CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0524400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os10g0524400 AK108768.1 - Phospholipase D (EC 3.1.4.4) 2e-19 At4g11840 PLDGAMMA3 S.X. H.G.
0.55 73.7 Os04g0467100 AK072142.1 - Conserved hypothetical protein 3e-1 At5g46750 AGD9 (ARF-GAP DOMAIN 9) S.X. H.G.
0.44 58.1 Os01g0546900 AK073801.1 - The start codon is not identified. 3e-6 At5g63080 transcription factor jumonji (jmjC) domain-containing protein S.X. H.G.
0.38 46.9 Os08g0517200 AK058787.1 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 1e-39 At4g29900 ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) S.X. H.G.
0.33 38.8 Os02g0721800 AK100043.1 - Phosphatidylinositol transfer-like protein IV 2e-9 At1g75370 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative S.X. H.G.
0.27 27.5 Os06g0712400 AK067573.1 - Protein of unknown function DUF544 family protein 9e-8 At4g11860 - S.X. H.G.
0.19 15.1 Os09g0279100 9637.m00832 - Protein kinase domain containing protein 5e-18 At2g32850 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.2 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.0 97.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
4.5 96.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 7e-122 440 Os03g0119100 AK069519.1 - Phospholipase D beta 2 8e-27 At2g42010 PLDBETA1 (PHOSPHOLIPASE D BETA 1) C.G. S.X.
0.25 0 1921 Os10g0524500 AF251031.1 - Mandelonitrile lyase-like protein 7e-5 At5g51950 glucose-methanol-choline (GMC) oxidoreductase family protein C.G. S.X.
0.05 3e-7 59 Os07g0260400 AK070203.1 - Phospholipase D 7e-9 At4g35790 ATPLDDELTA C.G. S.X.
0.04 1e-9 67 Os03g0840800 AK069703.1 - Phospholipase D 9e-5 At4g11840 PLDGAMMA3 C.G. S.X.
0.03 5e-28 129 Os04g0573100 AK106787.1 - Glucose-methanol-choline oxidoreductase domaincontaining protein 1e+0 At5g51950 glucose-methanol-choline (GMC) oxidoreductase family protein C.G. S.X.
0.01 2e-5 54 Os04g0501500 9632.m04037 - K+ channel tetramerisation domain containingprotein 3e-6 At2g24240 potassium channel tetramerisation domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-19 99 Arabidopsis thaliana At4g11840 826790 PLDGAMMA3 member of C2-PLD subfamily - - - C.G. S.X.
0.12 1e-14 83 Glycine max GmaAffx.63625.1.S1_at BG507997 - - 2e-5 At4g11830 PLDGAMMA2 C.G. S.X.
0.26 1e-178 626 Hordeum vulgare Contig2597_at Contig2597 - - 3e-12 At4g11850 PLDGAMMA1 C.G. S.X.
0.18 2e-28 129 Populus trichocarpa PtpAffx.211492.1.S1_s_at pmrna22523 hypothetical protein - 1e-65 At2g42010 PLDBETA1 (PHOSPHOLIPASE D BETA 1) C.G. S.X.
0.23 9e-120 432 Triticum aestivum Ta.3414.1.S1_at BJ265462 - - 6e-14 At2g42010 PLDBETA1 (PHOSPHOLIPASE D BETA 1) C.G. S.X.
0.03 1e-1 38 Vitis vinifera 1616981_at CB971105 phospholipase D alpha - 4e-52 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.01 1e-2 42 Zea mays Zm.8729.1.A1_at BM339706 hypothetical protein LOC100277693 - 2e-2 At3g42310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0046470 The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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