CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0520200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os10g0520200 NM_197388.1 - - 2e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) S.X. H.G.
0.80 94.6 Os06g0257700 9634.m01465 - - 4e+0 At2g38310 unknown protein S.X. H.G.
0.77 93.1 Os02g0487400 9630.m02723 - - 4e+0 At5g37550 unknown protein S.X. H.G.
0.67 87.2 Os09g0491500 NM_187103.1 - - 4e-1 At5g25940 early nodulin-related S.X. H.G.
0.55 73.7 Os09g0455100 9637.m02489 - - 1e+0 At3g28940 avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative S.X. H.G.
0.31 34.5 Os05g0484200 9633.m03792 - - 6e-1 At2g46940 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.2 99.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.6 99.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.0 99.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.9 99.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.4 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.5 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.8 99.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.2 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.8 99.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.0 99.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 46 Os03g0378500 9631.m02566 - P-type R2R3 Myb protein (Fragment) 5e-4 At4g22680 MYB85 (myb domain protein 85) C.G. S.X.
0.03 5e-3 44 Os03g0581600 BQ906717 - DAG protein, chloroplast precursor 8e-5 At1g11430 plastid developmental protein DAG, putative C.G. S.X.
0.03 5e-3 44 Os09g0501200 AK063752.1 - 60S ribosomal protein L32 (Ribosomal protein 49) 8e-21 At5g46430 60S ribosomal protein L32 (RPL32B) C.G. S.X.
0.02 1e-3 46 Os09g0543400 9637.m03142 - Ornithine decarboxylase (EC 4.1.1.17) 1e+1 At1g11210 unknown protein C.G. S.X.
0.02 1e-3 46 Os10g0459600 AK110989.1 - Xyloglucan galactosyltransferase 6e-2 At4g13990 exostosin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Arabidopsis thaliana At1g70895 843428 CLE17 (CLAVATA3/ESR-RELATED 17) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. - - - C.G. S.X.
0.02 2e-1 38 Glycine max GmaAffx.64626.1.S1_at BM523464 - - 5e-2 At2g30560 glycine-rich protein C.G. S.X.
0.03 8e-2 38 Hordeum vulgare Contig4743_at Contig4743 - - 3e-21 At5g11060 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.220482.1.S1_at pmrna36875 hypothetical protein - 4e+0 At2g21280 SULA C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.3965.3.S1_x_at CA733869 - - 1e+0 At3g25030 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1613111_at CA809998 - - 1e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
0.02 7e-2 38 Zea mays Zm.6201.1.A1_at BE643575 - - 1e-1 At3g50690 leucine-rich repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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