CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0512500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os10g0512500 AK067203.1 - Protein of unknown function UPF0044 family protein 1e+0 At1g18210 calcium-binding protein, putative S.X. H.G.
0.91 98.9 Os03g0152700 AK067387.1 - RNA-binding S4 domain containing protein 3e-8 At2g39140 SVR1 (SUPPRESSOR OF VARIEGATION 1) S.X. H.G.
0.80 94.6 Os05g0387200 AK060744.1 - UDP-sulfoquinovose synthase, chloroplast precursor(EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase)(Sulfolipid biosynthesis protein) (SoSQD1) 2e-66 At4g33030 SQD1 S.X. H.G.
0.67 87.2 Os02g0735800 AK065002.1 - Protein prenyltransferase domain containingprotein 1e+0 At3g13880 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.61 81.2 Os08g0254500 AK104050.1 - Preprotein translocase secY subunit, chloroplastprecursor (CpSecY) 8e-49 At2g18710 SCY1 (SecY Homolog 1) S.X. H.G.
0.50 68.0 Os02g0694800 AK068426.1 - Protein kinase domain containing protein 3e+0 At2g39855 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.7 98.6 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
14.4 98.6 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
11.5 98.2 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
11.2 98.2 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.2 98.0 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
9.9 98.0 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
9.8 98.0 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
8.9 97.8 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
6.8 97.3 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.7 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 40 Os02g0126900 9630.m00248 - Phosphatidate cytidylyltransferase family protein 4e-17 At2g45150 phosphatidate cytidylyltransferase family protein C.G. S.X.
0.01 1e-1 40 Os03g0268000 AK063856.1 - Protein phosphatase 1, catalytic gsmms subunit 9e-38 At5g59160 TOPP2 C.G. S.X.
0.01 1e-1 40 Os03g0586900 AK099721.1 - Putative DNA helicase family protein 3e-23 At2g03270 DNA-binding protein, putative C.G. S.X.
0.01 1e-1 40 Os09g0463100 9637.m02541 - - 1e-12 At3g63470 scpl40 (serine carboxypeptidase-like 40) C.G. S.X.
0.01 1e-1 40 Os11g0307600 AK070683.1 - Conserved hypothetical protein 2e-2 At2g44390 DC1 domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At1g18210 838401 calcium-binding protein, putative F:calcium ion binding;P:biological_process unknown;C:plasma membrane, vacuole;MFPOB - - - C.G. S.X.
0.01 4e-1 38 Glycine max GmaAffx.37787.1.S1_at BI316148 - - 4e-16 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.18 3e-52 206 Hordeum vulgare Contig10044_at Contig10044 - - 5e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) C.G. S.X.
0.02 4e-1 38 Populus trichocarpa PtpAffx.204586.1.S1_at pmrna9007 hypothetical protein - 2e-6 At2g21350 RNA binding C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.24618.1.S1_x_at CK207076 - - 2e+0 At4g12480 pEARLI 1 C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1615959_at CA809577 hypothetical protein LOC100259145 - 4e-1 At4g05265 unknown protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.966.1.A1_at CF021756 hypothetical protein LOC100276337 - 6e+0 At3g51110 crooked neck protein, putative / cell cycle protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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