CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0510400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os10g0510400 AK100601.1 - Putative methyltransferase DUF248 family protein 1e-3 At1g33170 dehydration-responsive family protein S.X. H.G.
0.40 51.1 Os08g0525000 AK103220.1 - Ras GTPase family protein 1e-41 At2g43130 ARA4 S.X. H.G.
0.33 38.8 Os01g0883900 AK119636.1 - Putative methyltransferase DUF248 family protein 2e-12 At5g64030 dehydration-responsive protein-related S.X. H.G.
0.27 27.5 Os05g0218400 CB680782 - Protein kinase domain containing protein 4e-18 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) S.X. H.G.
0.23 21.2 Os03g0300000 AK060863.1 - The start codon is not identified. 1e-14 At3g62720 XT1 (XYLOSYLTRANSFERASE 1) S.X. H.G.
0.13 8.2 Os10g0477100 AK067258.1 - Ankyrin-like protein 5e-43 At4g14360 dehydration-responsive protein-related S.X. H.G.
0.04 2.0 Os06g0561200 AK120422.1 - Potassium/proton antiporter-like protein 5e-31 At2g19600 ATKEA4 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.8 97.6 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
7.8 97.6 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
7.1 97.4 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.6 97.3 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.3 97.2 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
6.0 97.0 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.4 96.8 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
5.3 96.7 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
5.3 96.7 GSM159195 Inflorescence (P3, 5 - 10 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
5.3 96.7 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 9e-25 117 Os04g0570800 AK099906.1 - Putative methyltransferase DUF248 family protein 1e-4 At4g00750 dehydration-responsive family protein C.G. S.X.
0.07 5e-14 81 Os06g0103900 AK111870.1 - Putative methyltransferase DUF248 family protein 3e-10 At4g10440 dehydration-responsive family protein C.G. S.X.
0.07 3e-6 56 Os06g0128100 CA766672 - Putative methyltransferase DUF248 family protein 2e-8 At2g45750 dehydration-responsive family protein C.G. S.X.
0.03 5e-5 52 Os10g0522000 CB676430 - Putative methyltransferase DUF248 family protein 1e+0 At2g45750 dehydration-responsive family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-3 46 Arabidopsis thaliana At1g33170 840213 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:unknown;PBOAM - - - C.G. S.X.
0.05 2e-6 56 Glycine max GmaAffx.41555.1.S1_at AW781650 - - 3e-16 At2g45750 dehydration-responsive family protein C.G. S.X.
0.57 0 1229 Hordeum vulgare Contig8454_at Contig8454 - - 2e-14 At1g33170 dehydration-responsive family protein C.G. S.X.
0.15 2e-3 46 Populus trichocarpa PtpAffx.2394.1.A1_s_at CX659431 hypothetical protein - 2e-45 At1g33170 dehydration-responsive family protein C.G. S.X.
0.51 0 734 Triticum aestivum TaAffx.9851.1.S1_at BJ314167 Dehydration-induced protein - 8e-19 At1g33170 dehydration-responsive family protein C.G. S.X.
0.06 7e-3 42 Vitis vinifera 1611979_at CB979128 hypothetical protein LOC100251016 - 1e-31 At4g19120 ERD3 (early-responsive to dehydration 3) C.G. S.X.
0.10 2e-53 210 Zea mays Zm.11675.1.A1_at BM379855 ankyrin protein kinase-like - 5e+0 At4g11745 kelch repeat-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage