CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0508700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.7 Os10g0508700 AK060639.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 2e-1 At2g37580 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.37 45.0 Os01g0676200 AK070436.1 - Conserved hypothetical protein 2e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein S.X. H.G.
0.37 45.0 Os10g0536500 AK066849.1 - Conserved hypothetical protein 4e-1 At5g50660 unknown protein S.X. H.G.
0.35 41.7 Os02g0578400 9630.m03520 - Photosystem II oxygen evolving complex proteinPsbQ family protein 4e-7 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein S.X. H.G.
0.32 36.3 Os07g0105600 AK068377.1 - Photosystem II oxygen evolving complex proteinPsbQ family protein 1e-1 At5g56840 DNA-binding family protein S.X. H.G.
0.30 32.7 Os10g0533100 AK111957.1 - Conserved hypothetical protein 5e-1 At2g40020 - S.X. H.G.
0.28 31.1 Os03g0322600 AK067222.1 - Hypothetical protein 4e-2 At5g22340 unknown protein S.X. H.G.
0.27 27.5 Os05g0429500 AK058688.1 - Dienelactone hydrolase domain containing protein 2e+0 At1g35420 dienelactone hydrolase family protein S.X. H.G.
0.26 25.6 Os04g0610500 AK066289.1 - Peptidase M24, methionine aminopeptidase familyprotein 8e-7 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) S.X. H.G.
0.26 25.6 Os05g0565400 CF334118 - - 3e+0 At3g11800 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.1 98.9 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
17.1 98.8 GSM421717 MOCK, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.2 98.8 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.0 98.5 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.4 98.5 GSM431938 Shoot- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
12.4 98.3 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.4 98.3 GSM421677 XOC, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.8 98.3 GSM431937 Shoot- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.2 98.2 GSM421715 MOCK, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.2 98.0 GSM421716 MOCK, 8 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-5 52 Os04g0106000 AK111054.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 5e+0 At3g45990 actin-depolymerizing factor, putative C.G. S.X.
0.04 6e-2 40 Os11g0185400 9639.m00758 - - 4e-2 At5g55570 unknown protein C.G. S.X.
0.03 8e-5 50 Os05g0368100 9633.m02771 - - 3e-1 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e-6 56 Os11g0297800 AK109882.1 - Glycoside hydrolase, family 3, N-terminal domaincontaining protein 9e-2 At3g19620 glycosyl hydrolase family 3 protein C.G. S.X.
0.02 8e-5 50 Os08g0514000 9636.m04074 - Legume lectin, beta domain containing protein 3e-1 At4g02420 lectin protein kinase, putative C.G. S.X.
0.02 8e-5 50 Os11g0291500 AK108558.1 - Hypothetical protein 3e+0 At1g02640 BXL2 (BETA-XYLOSIDASE 2) C.G. S.X.
0.02 1e-3 46 Os05g0197300 AK106389.1 - IQ calmodulin-binding region domain containingprotein 2e-5 At2g26190 calmodulin-binding family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At2g37580 818334 zinc finger (C3HC4-type RING finger) family protein F:protein binding, transferase activity, transferring glycosyl groups, zinc ion binding;P:unknown;C:unknown;PMOFV - - - C.G. S.X.
0.02 6e-2 40 Glycine max GmaAffx.73080.1.S1_at BI427357 - - 2e-1 At4g21620 glycine-rich protein C.G. S.X.
0.04 5e-6 52 Hordeum vulgare Contig23023_at Contig23023 - - 7e-2 At4g35590 RWP-RK domain-containing protein C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.217486.1.S1_at pmrna32771 hypothetical protein - 2e+1 At4g16710 glycosyltransferase family protein 28 C.G. S.X.
0.19 2e-22 107 Triticum aestivum Ta.19160.1.S1_at CA648093 - - 7e-3 At1g75550 glycine-rich protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1622667_at CF568939 - - 1e+0 At3g27329 - C.G. S.X.
0.05 4e-3 42 Zea mays Zm.1943.1.A1_at BM080868 - - 6e+0 At3g28440 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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