CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0505500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os10g0505500 AK062529.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 8e+0 At4g18425 unknown protein S.X. H.G.
0.67 87.2 Os05g0191700 9633.m00896 - Acid phosphatase (Class B) family protein 1e-1 At2g27130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.44 58.1 Os06g0119600 AK066409.1 - Peptidase aspartic family protein 1e+0 At5g10760 aspartyl protease family protein S.X. H.G.
0.33 38.8 Os11g0653300 AK119392.1 - Hypothetical protein 3e-2 At3g21710 unknown protein S.X. H.G.
0.29 31.1 Os11g0661900 AK064062.1 - Hypothetical protein 8e-1 At5g57640 - S.X. H.G.
0.15 10.3 Os11g0661600 AK108713.1 - Peroxidase precursor (EC 1.11.1.7) 3e-3 At5g15180 peroxidase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.8 99.9 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
54.6 99.9 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
50.1 99.9 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
40.1 99.9 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
36.4 99.8 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
27.0 99.6 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
12.4 98.3 GSM304646 Unstable transgenic line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.0 98.3 GSM304497 Unstable transgenic line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
9.7 98.0 GSM254091 Rice overexpressed OsSKIPa, biological repeat 1 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
9.6 97.9 GSM304671 Unstable mutant line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 2e-38 161 Os10g0504900 AK063117.1 - Lipid transfer protein 9e-1 At1g76965 - C.G. S.X.
0.26 1e-40 169 Os10g0505000 BI801318 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 3e-4 At3g49300 proline-rich family protein C.G. S.X.
0.05 2e-2 42 Os03g0111300 AK062506.1 - Nonspecific lipid-transfer protein 2 (nsLTP2) (7kDa lipid transfer protein) 3e-1 At3g22275 unknown protein C.G. S.X.
0.02 1e-3 46 Os01g0837300 AB079063.2 - UDP-glucuronic acid decarboxylase 7e-35 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) C.G. S.X.
0.02 4e-3 44 Os01g0191900 AK109125.1 - Blind 4e-2 At3g27809 unknown protein C.G. S.X.
0.02 2e-2 42 Os03g0730800 AK073220.1 - Calcium-transporting ATPase 3, endoplasmicreticulum-type (EC 3.6.3.8) 2e-46 At1g10130 ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) C.G. S.X.
0.01 2e-2 42 Os05g0103600 AK102584.1 - Ankyrin-like protein 2e-1 At2g36680 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At4g18425 827573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.56374.1.S1_at BF598372 - - 1e-27 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
0.09 6e-2 38 Hordeum vulgare Contig9069_at Contig9069 - - 4e+0 At1g51060 HTA10 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.208220.1.S1_at pmrna16360 hypothetical protein - 7e-4 At5g02570 histone H2B, putative C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.30755.1.S1_at CN007962 - - 1e+0 At3g09750 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1619255_at CB341953 - - 1e+1 At5g46780 VQ motif-containing protein C.G. S.X.
0.06 1e-2 40 Zea mays Zm.17087.1.S1_at BM267086 nonspecific lipid-transfer protein - 1e+1 At3g10915 reticulon family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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