CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0502600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.87 96.6 Os10g0502600 AK069511.1 - Cytochrome b5 domain containing protein 4e-26 At3g48890 ATMP2 S.X. H.G.
0.52 69.6 Os06g0264300 AK061556.1 - UV excision repair protein Rad23 family protein 1e-12 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) S.X. H.G.
0.48 63.7 Os11g0610700 AK099760.1 - Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein 2e-1 At2g23320 WRKY15 S.X. H.G.
0.46 60.9 Os02g0741900 AK068461.1 - Conserved hypothetical protein 2e+0 At1g24050 unknown protein S.X. H.G.
0.45 58.8 Os09g0411700 AK058290.1 - PpiC-type peptidyl-prolyl cis-trans isomerasedomain containing protein 2e-37 At1g26550 peptidyl-prolyl cis-trans isomerase PPIC-type family protein S.X. H.G.
0.42 53.9 Os02g0634900 AK059769.1 - Proteasome subunit alpha type 2 (EC 3.4.25.1) (20Sproteasome alpha subunit B) (20S proteasome subunitalpha-2) 2e-59 At1g16470 PAB1 (PROTEASOME SUBUNIT PAB1) S.X. H.G.
0.39 48.3 Os12g0507200 AK099039.1 - Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D) 9e-49 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) S.X. H.G.
0.36 44.0 Os08g0548200 AK102617.1 - ER lumen protein retaining receptor-like protein 2e-22 At1g19970 ER lumen protein retaining receptor family protein S.X. H.G.
0.34 40.0 Os02g0666800 AK101444.1 - Protein of unknown function DUF788 family protein 3e-5 At4g30500 unknown protein S.X. H.G.
0.33 38.8 Os04g0386600 AK104891.1 - Isocitrate lyase and phosphorylmutase familyprotein 2e-8 At2g43180 catalytic S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 96.8 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
3.9 95.8 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
3.9 95.8 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.5 95.3 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.4 95.2 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
3.4 95.2 GSM159212 Seed (S2, 3 - 4 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.0 94.6 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
3.0 94.6 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
2.8 94.3 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
2.8 94.3 GSM154960 Leaf_OsRR6-overexpressor_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 3e-38 161 Os02g0640300 AK069079.1 - Cytochrome b5 domain containing protein 2e-16 At3g48890 ATMP2 C.G. S.X.
0.20 9e-29 129 Os10g0502500 AK061824.1 - Cytochrome b5 domain containing protein 4e-14 At3g48890 ATMP2 C.G. S.X.
0.02 3e-4 48 Os07g0516400 NM_187395.1 - Conserved hypothetical protein 2e+0 At5g27690 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 1e-3 46 Os07g0241500 AK107239.1 - - 2e-7 At5g05860 UGT76C2 C.G. S.X.
0.02 4e-3 44 Os05g0557100 9633.m04510 - Peptidase A1, pepsin family protein 7e-1 At3g44235 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 4e-26 119 Arabidopsis thaliana At3g48890 824050 ATMP2 putative progesterone-binding protein homolog (Atmp2) mRNA, - - - C.G. S.X.
0.26 8e-47 188 Glycine max Gma.1144.2.S1_at BE821744 - - 3e-42 At3g48890 ATMP2 C.G. S.X.
0.47 2e-116 418 Hordeum vulgare Contig3554_at Contig3554 - - 6e-13 At3g48890 ATMP2 C.G. S.X.
0.17 6e-20 99 Populus trichocarpa Ptp.2453.1.S1_at CV284013 hypothetical protein - 2e-28 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.34 6e-78 291 Triticum aestivum Ta.27188.1.S1_at BT009156.1 - - 1e-1 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.25 9e-31 133 Vitis vinifera 1609309_at CF568890 - - 4e-43 At3g48890 ATMP2 C.G. S.X.
0.40 1e-98 359 Zea mays Zm.14411.1.A1_a_at AI491646 membrane steroid-binding protein 1 - 7e-16 At3g48890 ATMP2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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