Gene omics information

Query gene ID	Os10g0502500
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.7	Os10g0502500	AK061824.1	-	Cytochrome b5 domain containing protein	4e-14	At3g48890	ATMP2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os03g0169900	AK063222.1	-	Conserved hypothetical protein	4e-1	At5g64850	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os10g0363600	AK111523.1	-	Cyclin-like F-box domain containing protein	4e-3	At1g22040	kelch repeat-containing F-box family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os02g0830100	AK065077.1	-	Oligopeptidase A	7e-24	At5g65620	peptidase M3 family protein / thimet oligopeptidase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os06g0728500	AK099928.1	-	Hypothetical protein	2e-2	At1g70190	ribosomal protein L12 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	Os02g0773300	AK071811.1	-	Pyridoxal phosphate-dependent deaminase familyprotein	3e-12	At1g48420	D-CDES (D-CYSTEINE DESULFHYDRASE)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	97.5	GSM154950	Leaf_tZ-treatment_30min_replicate 3	GSE6719	Cytokinin responsive genes in rice
6.5	97.2	GSM154945	Leaf_DMSO-treatment_30min_replicate 1	GSE6719	Cytokinin responsive genes in rice
6.4	97.2	GSM154946	Leaf_DMSO-treatment_30min_replicate 2	GSE6719	Cytokinin responsive genes in rice
6.4	97.2	GSM154947	Leaf_DMSO-treatment_30min_replicate 3	GSE6719	Cytokinin responsive genes in rice
6.3	97.2	GSM154952	Leaf_DMSO-treatment_120min_replicate 2	GSE6719	Cytokinin responsive genes in rice
6.3	97.2	GSM154955	Leaf_tZ-treatment_120min_replicate 2	GSE6719	Cytokinin responsive genes in rice
6.1	97.1	GSM173089	Rice MH63 Control3	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.9	97.0	GSM173094	Rice OsSRT1 RNAi transgenic line LM3	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.6	96.9	GSM154951	Leaf_DMSO-treatment_120min_replicate 1	GSE6719	Cytokinin responsive genes in rice
5.6	96.9	GSM154953	Leaf_DMSO-treatment_120min_replicate 3	GSE6719	Cytokinin responsive genes in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	1e-28	129	Os10g0502600	AK069511.1	-	Cytochrome b5 domain containing protein	4e-26	At3g48890	ATMP2	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	4e-31	137	Os02g0640300	AK069079.1	-	Cytochrome b5 domain containing protein	2e-16	At3g48890	ATMP2	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-3	46	Os01g0243400	AK070651.1	-	Hypothetical protein	1e+0	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	5e-3	44	Os06g0503100	AK105826.1	-	ABC transporter related domain containing protein	6e-2	At1g53163	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	7e-2	40	Os02g0249300	9630.m01412	-	Zn-finger, RING domain containing protein	1e+0	At2g01610	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-3	44	Os01g0126200	AK121464.1	-	Spore coat protein-like protein	7e-2	At1g71040	LPR2 (Low Phosphate Root2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	4e-14	79	Arabidopsis thaliana	At3g48890	824050	ATMP2	putative progesterone-binding protein homolog (Atmp2) mRNA,	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	3e-25	117	Glycine max	GmaAffx.90559.1.S1_x_at	CF806284	-	-	2e-23	At3g48890	ATMP2	C.G.	S.X.	Please select
0.35	4e-108	391	Hordeum vulgare	Contig10724_at	Contig10724	-	-	1e-10	At3g48890	ATMP2	C.G.	S.X.	Please select
0.10	6e-14	79	Populus trichocarpa	Ptp.2453.1.S1_at	CV284013	hypothetical protein	-	2e-28	At5g52240	MSBP1 (membrane steroid binding protein 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	3e-89	329	Triticum aestivum	Ta.6101.2.S1_a_at	CA697971	-	-	3e-16	At3g48890	ATMP2	C.G.	S.X.	Please select
0.14	5e-14	77	Vitis vinifera	1609309_at	CF568890	-	-	4e-43	At3g48890	ATMP2	C.G.	S.X.	Please select
0.18	2e-63	242	Zea mays	Zm.8884.1.A1_at	CF018008	hypothetical protein LOC100280133	-	3e-9	At3g48890	ATMP2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
C	GO:0022900	A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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