CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0496000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 51.1 Os10g0496000 AK109091.1 - The start codon is not identified. 2e-7 At2g28810 Dof-type zinc finger domain-containing protein S.X. H.G.
0.67 87.2 Os06g0239500 AK064959.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 6e-2 At1g72600 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.55 73.7 Os02g0551700 AK106428.1 - Protein of unknown function DUF668 family protein 8e-1 At1g34320 unknown protein S.X. H.G.
0.30 32.7 Os05g0143800 AK106538.1 - GH3 auxin-responsive promoter family protein 1e+0 At2g46505 SDH4 S.X. H.G.
0.29 31.1 Os12g0105500 AK109049.1 - Phosphatidate cytidylyltransferase family protein 5e-1 At5g52490 fibrillarin, putative S.X. H.G.
0.29 31.1 Os09g0409000 AK107676.1 - Hypothetical protein 3e-2 At4g31580 SRZ-22 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.1 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 5e-34 147 Os06g0284500 9634.m01755 - Zn-finger, Dof type domain containing protein 2e-14 At2g37590 Dof-type zinc finger domain-containing protein C.G. S.X.
0.11 6e-43 176 Os04g0567800 AB028129.1 - Dof zinc finger protein 9e-17 At2g37590 Dof-type zinc finger domain-containing protein C.G. S.X.
0.10 8e-36 153 Os02g0707200 AF542507.1 - The start codon is not identified. 3e-15 At2g37590 Dof-type zinc finger domain-containing protein C.G. S.X.
0.10 2e-33 145 Os01g0865800 AU066081 - AOBP (Ascorbate oxidase promoter-binding protein) 2e-15 At3g52440 Dof-type zinc finger domain-containing protein C.G. S.X.
0.09 2e-45 184 Os02g0673700 AB028130.1 - Zn finger protein (Fragment) 1e-14 At2g37590 Dof-type zinc finger domain-containing protein C.G. S.X.
0.08 2e-33 145 Os03g0764900 AK063380.1 - Zn finger protein (Fragment) 3e-19 At2g37590 Dof-type zinc finger domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-7 57 Arabidopsis thaliana At2g28810 817430 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFB - - - C.G. S.X.
0.08 4e-9 63 Glycine max GmaAffx.84267.1.S1_at BM892803 Dof22 - 2e-12 At3g21270 ADOF2 C.G. S.X.
0.09 2e-18 93 Hordeum vulgare Contig13717_at Contig13717 - - 8e-22 At2g37590 Dof-type zinc finger domain-containing protein C.G. S.X.
0.04 6e-5 50 Populus trichocarpa PtpAffx.215516.1.S1_at pmrna29759 f-box family protein - 3e-23 At1g28310 Dof-type zinc finger domain-containing protein C.G. S.X.
0.10 1e-11 71 Triticum aestivum TaAffx.116069.1.S1_at CA702374 - - 3e-7 At4g38000 Dof-type zinc finger domain-containing protein C.G. S.X.
0.06 9e-7 54 Vitis vinifera 1615083_at CB914242 - - 1e-38 At4g24060 Dof-type zinc finger domain-containing protein C.G. S.X.
0.12 1e-22 107 Zea mays Zm.94.1.A1_at X79934.1 Dof2 - 1e-7 At2g28810 Dof-type zinc finger domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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