CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0465300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os10g0465300 9638.m02855 - - 3e-1 At5g22650 HD2B (HISTONE DEACETYLASE 2B) S.X. H.G.
0.83 95.8 Os12g0513800 AK107995.1 - Hypothetical protein 1e+1 At5g49280 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.80 94.6 Os07g0113100 NM_194118.1 - - 1e+0 At2g06520 PSBX (photosystem II subunit X) S.X. H.G.
0.73 91.1 Os05g0293400 9633.m02008 - - 2e-1 At4g33480 unknown protein S.X. H.G.
0.67 87.2 Os03g0207100 9631.m01005 - - 1e+0 At2g21880 ATRAB7A S.X. H.G.
0.40 51.1 Os01g0708800 9629.m04964 - - 2e+0 At2g28920 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
74.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.7 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.2 99.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.1 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.3 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.7 99.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.4 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.4 99.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1 99.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 38 Os08g0199900 9636.m00956 - - 4e+0 At5g66980 transcriptional factor B3 family protein C.G. S.X.
0.03 2e-1 38 Os12g0488600 9640.m02947 - 50S ribosomal protein L4 7e-3 At2g20060 ribosomal protein L4 family protein C.G. S.X.
0.02 4e-2 40 Os02g0667600 AK109748.1 - Harpin-induced 1 domain containing protein 3e-2 At5g42860 unknown protein C.G. S.X.
0.02 4e-2 40 Os05g0368700 AK064686.1 - Subtilase family protein 2e-6 At1g01900 SBTI1.1 C.G. S.X.
0.01 4e-2 40 Os11g0665000 9639.m04112 - - 8e-2 At2g05520 GRP-3 (GLYCINE-RICH PROTEIN 3) C.G. S.X.
0.01 2e-1 38 Os10g0496000 AK109091.1 - The start codon is not identified. 2e-7 At2g28810 Dof-type zinc finger domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 36 Arabidopsis thaliana At5g22650 832328 HD2B (HISTONE DEACETYLASE 2B) Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation. - - - C.G. S.X.
0.03 3e-2 40 Glycine max PsAffx.CL690Contig1_s_at PsAffx.CL690Contig1 - - 1e-1 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) C.G. S.X.
0.03 6e-1 34 Hordeum vulgare Contig16131_at Contig16131 - - 5e-6 At5g02570 histone H2B, putative C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.212699.1.S1_at pmrna24837 hypothetical protein - 3e-4 At4g09460 ATMYB6 C.G. S.X.
0.05 3e-1 36 Triticum aestivum Ta.518.2.S1_s_at BG905035 - - 4e+0 At4g21510 F-box family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620842_at CB345023 - - 2e+0 At3g15351 unknown protein C.G. S.X.
0.04 6e-1 34 Zea mays ZmAffx.1168.1.S1_s_at AW600602 early fruit mRNA - 2e-1 At5g16380 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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