CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0458200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os10g0458200 9638.m02775 - - 1e+0 At4g30370 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.67 87.2 Os12g0511700 9640.m03180 - - 1e-1 At3g03030 F-box family protein S.X. H.G.
0.61 81.2 Os01g0288100 NM_183572.1 - - 1e-1 At1g07175 unknown protein S.X. H.G.
0.60 79.7 Os01g0278100 AK105195.1 - Conserved hypothetical protein 6e-1 At5g28800 unknown protein S.X. H.G.
0.60 79.7 Os02g0661400 9630.m04282 - - 3e-1 At5g61230 ankyrin repeat family protein S.X. H.G.
0.59 78.0 Os04g0232500 9632.m01461 - - 1e+0 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
163.1 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
63.7 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 3e-108 393 Os10g0458300 AK109739.1 - Conserved hypothetical protein 3e+0 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative C.G. S.X.
0.08 9e-16 85 Os05g0548700 9633.m04424 - Conserved hypothetical protein 2e+0 At1g32360 zinc finger (CCCH-type) family protein C.G. S.X.
0.07 8e-10 65 Os06g0719600 AK060956.1 - Conserved hypothetical protein 4e-3 At5g44450 methyltransferase C.G. S.X.
0.06 1e-5 52 Os07g0258000 AK109782.1 - Conserved hypothetical protein 6e-2 At5g22550 unknown protein C.G. S.X.
0.05 5e-5 50 Os06g0721700 9634.m04929 - - 2e+0 At5g58650 PSY1 (plant peptide containing sulfated tyrosine 1) C.G. S.X.
0.03 5e-8 59 Os01g0776800 AK101996.1 - Conserved hypothetical protein 9e-1 At1g54840 - C.G. S.X.
0.03 5e-5 50 Os04g0463400 AK059730.1 - Protein of unknown function DUF125 family protein 9e-15 At2g01770 VIT1 (vacuolar iron transporter 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At4g30370 829160 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV - - - C.G. S.X.
0.04 3e-2 40 Glycine max PsAffx.C22000129_at PsAffx.C22000129 - - 1e+0 At2g11005 glycine-rich protein C.G. S.X.
0.03 7e-4 44 Hordeum vulgare Contig2416_at Contig2416 - - 2e-4 At5g46780 VQ motif-containing protein C.G. S.X.
0.06 2e+0 34 Populus trichocarpa PtpAffx.218717.1.S1_at pmrna34439 - - 7e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.04 2e-3 44 Triticum aestivum Ta.18686.1.A1_at CK169065 - - 1e-1 At2g33710 AP2 domain-containing transcription factor family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614499_at CF205866.1 - - 5e-1 At3g04730 IAA16 C.G. S.X.
0.03 4e-2 38 Zea mays Zm.1496.1.A1_at BM349973 UPF0497 membrane protein 9 - 2e+0 At2g17705 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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