CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0450400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os10g0450400 AK119329.1 - Protein of unknown function DUF594 family protein 4e-1 At1g49990 - S.X. H.G.
0.33 38.8 Os12g0220800 AK108124.1 - Hypothetical protein 5e-1 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) S.X. H.G.
0.23 21.2 Os11g0693700 9639.m04384 - - 2e-8 At2g30740 serine/threonine protein kinase, putative S.X. H.G.
0.22 19.4 Os02g0282500 9630.m01709 - NBS-LRR protein (Fragment) 3e-1 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) S.X. H.G.
0.17 12.6 Os01g0152500 NM_184401.1 - SWIM Zn-finger domain containing protein 3e-1 At3g24830 60S ribosomal protein L13A (RPL13aB) S.X. H.G.
0.14 9.3 Os06g0286600 9634.m01776 - - 8e+0 At5g44060 unknown protein S.X. H.G.
0.13 8.2 Os12g0255600 CF316640 - Endonuclease/exonuclease/phosphatase familyprotein 3e+0 At5g02980 kelch repeat-containing F-box family protein S.X. H.G.
0.06 3.0 Os11g0617700 9639.m03689 - - 4e+0 At5g46090 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
124.6 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
58.5 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.3 99.5 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.6 99.0 GSM359910 IR29 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.3 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM359912 IR29 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
8.6 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM359909 IR29 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.1 97.1 GSM100444 Rice Bala 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
4.6 96.3 GSM149412 Rice Bala 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-3 46 Os11g0616900 AK066199.1 - Hypothetical protein 2e+0 At5g41430 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e-1 40 Os05g0508500 AB053294.1 - Thioredoxin H 2e-6 At5g42980 ATTRX3 (THIOREDOXIN 3) C.G. S.X.
0.01 8e-1 38 Os03g0328900 AK102616.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 4e-7 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 8e-1 38 Os07g0682400 AK111556.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 3e-2 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 8e-1 38 Os07g0682500 AK109592.1 - Hypothetical protein 6e-3 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 8e-1 38 Os11g0618500 AK068193.1 - Protein of unknown function DUF594 family protein 2e+0 At5g25590 - C.G. S.X.
0.01 8e-1 38 Os12g0140600 AK111120.1 - RING-H2 finger protein RHY1a (Fragment) 7e+0 At5g62210 embryo-specific protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Arabidopsis thaliana At1g49990 841423 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.01 8e+0 34 Glycine max PsAffx.psZS003xN22f_s_at PsAffx.psZS003xN22f - - 6e-1 At2g37030 auxin-responsive family protein C.G. S.X.
0.01 7e-1 36 Hordeum vulgare HVSMEm0014K07r2_at HVSMEm0014K07r2 - - 1e+0 At5g50120 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 5e-1 38 Populus trichocarpa PtpAffx.16469.1.A1_at BP932732 hypothetical protein - 2e-12 At4g34040 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e+0 36 Triticum aestivum TaAffx.9206.1.S1_at CA607955 - - 2e+0 At3g28310 - C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1609452_at BQ794280 hypothetical protein LOC100249768 - 3e-1 At4g31460 ribosomal protein L28 family protein C.G. S.X.
0.01 2e-1 38 Zea mays Zm.620.1.S1_at AF326508.1 tonoplast membrane integral protein ZmTIP4-4 - 1e-1 At3g16240 DELTA-TIP C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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