CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0438500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os10g0438500 AK103093.1 - Cyclin-like F-box domain containing protein 3e-3 At4g35930 - S.X. H.G.
0.50 68.0 Os04g0433800 9632.m03409 - ATP-dependent DNA helicase RecQ family protein 3e-17 At1g10930 RECQ4A S.X. H.G.
0.50 68.0 Os04g0620200 AK060209.1 - Remorin, C-terminal region domain containingprotein 4e-2 At2g02170 remorin family protein S.X. H.G.
0.47 62.3 Os12g0601000 9640.m03998 - Cyclin-like F-box domain containing protein 1e-2 At3g54650 FBL17 S.X. H.G.
0.44 58.1 Os03g0607600 9631.m03952 - Cyclin 9e-3 At5g43080 CYCA3 S.X. H.G.
0.28 31.1 Os05g0409400 AK102597.1 - MAP65/ASE1 family protein 7e-5 At2g38720 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.3 99.4 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
21.5 99.2 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
17.7 98.9 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
17.5 98.9 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
16.7 98.8 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
15.9 98.7 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
14.5 98.6 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Os08g0338800 9636.m02458 - - 2e+0 At4g10695 unknown protein C.G. S.X.
0.03 2e-1 38 Os12g0239900 AK107869.1 - Hypothetical protein 4e+0 At5g23600 tRNA 2'phosphotransferase, putative C.G. S.X.
0.03 7e-1 36 Os11g0294000 9639.m01752 - - 2e+0 At3g01260 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase C.G. S.X.
0.01 6e-3 44 Os09g0412900 AK102254.1 - Protein prenyltransferase domain containingprotein 5e-2 At1g27752 - C.G. S.X.
0.01 4e-2 40 Os03g0643300 AK108010.1 - Ornithine aminotransferase (EC 2.6.1.13) 1e-15 At5g46180 delta-OAT C.G. S.X.
0.01 3e-1 38 Os11g0572800 AK068220.1 - Cyclin-like F-box domain containing protein 9e-32 At5g06550 - C.G. S.X.
0.01 7e-1 36 Os10g0131700 NM_194732.1 - NB-ARC domain containing protein 1e+0 At3g42180 catalytic/ transferase, transferring glycosyl groups C.G. S.X.
0.01 7e-1 36 Os12g0614900 AK066039.1 - Hypothetical protein 3e-4 At1g16110 WAKL6 (wall associated kinase-like 6) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-3 44 Arabidopsis thaliana At4g35930 829748 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max HgAffx.22016.1.S1_at BI451542 - - 3e+0 At5g41530 - C.G. S.X.
0.57 5e-48 190 Hordeum vulgare Contig19999_at Contig19999 - - 7e-10 At4g35930 - C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.44606.1.A1_at CV225637 hypothetical protein - 3e-1 At5g50010 transcription factor/ transcription regulator C.G. S.X.
0.37 2e-39 163 Triticum aestivum Ta.7684.1.A1_at BJ264188 - - 4e+0 At1g08970 NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9) C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1611300_at CD008224 - - 1e+0 At1g48010 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.39 3e-18 91 Zea mays Zm.5427.1.A1_at CO521891 - - 5e+0 At4g35930 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage