Gene omics information

Query gene ID	Os10g0421800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	96.8	Os10g0421800	AK119359.1	-	Protein prenyltransferase domain containingprotein	5e-1	At5g49700	DNA-binding protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os01g0673800	AK120641.1	-	Conserved hypothetical protein	2e-3	At2g31040	ATP synthase protein I -related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os10g0111300	CB638003	-	TGF-beta receptor, type I/II extracellular regionfamily protein	1e-3	At1g69860	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.49	64.4	Os01g0237100	AK060943.1	-	Phosphoglycerate/bisphosphoglycerate mutase familyprotein	1e-1	At4g00650	FRI (FRIGIDA)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	Os01g0676200	AK070436.1	-	Conserved hypothetical protein	2e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os01g0810100	AK071916.1	-	Ribonuclease III domain containing protein	3e-22	At4g37510	ribonuclease III family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os10g0533100	AK111957.1	-	Conserved hypothetical protein	5e-1	At2g40020	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os03g0158300	AK066591.1	-	Conserved hypothetical protein	3e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os03g0856100	AK067137.1	-	TPR-like domain containing protein	1e+0	At5g46730	glycine-rich protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os04g0514400	AK108112.1	-	Peptidoglycan binding-like domain containingprotein	4e-1	At5g57070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.4	99.1	GSM421695	XOO, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
19.7	99.1	GSM421717	MOCK, 8 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
19.0	99.0	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
17.6	98.9	GSM421677	XOC, 8 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.1	98.8	GSM421715	MOCK, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.5	98.8	GSM421675	XOC, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.8	98.6	GSM421697	XOO, 8 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.2	98.5	GSM421676	XOC, 8 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.1	98.5	GSM421716	MOCK, 8 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.1	98.3	GSM421698	XOO, 8 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-9	67	Os02g0313500	AK120143.1	-	The start codon is not identified.	6e-7	At1g66590	cox19 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-9	67	Os02g0613600	AK071179.1	-	Sedlin (Trafficking protein particle complexprotein 2)	7e-6	At1g80500	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-9	67	Os06g0256200	AK072983.1	-	Hin19 (Fragment)	9e-1	At1g72080	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	4e-12	75	Os03g0650400	AK101644.1	-	Hypothetical protein	2e+0	At2g20613	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-9	67	Os02g0776700	AK070394.1	-	Myb, DNA-binding domain containing protein	1e+0	At1g72650	TRFL6 (TRF-LIKE 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-9	65	Os03g0376800	AK069760.1	-	KH, type 1 domain containing protein	1e+0	At3g15990	SULTR3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	38	Arabidopsis thaliana	At5g49700	835033	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;PMBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	2e-1	40	Glycine max	GmaAffx.19179.1.S1_at	BM528604	-	-	9e-1	At3g11770	nucleic acid binding	C.G.	S.X.	Please select
0.27	5e-67	256	Hordeum vulgare	Contig13242_at	Contig13242	-	-	2e+0	At2g34160	nucleic acid binding	C.G.	S.X.	Please select
0.01	4e-2	42	Populus trichocarpa	PtpAffx.206842.1.S1_at	pmrna13584	hypothetical protein	-	2e-28	At4g31850	PGR3 (PROTON GRADIENT REGULATION 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	5e-1	38	Triticum aestivum	TaAffx.104796.1.S1_x_at	CA744716	-	-	3e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.01	1e-1	38	Vitis vinifera	1610066_at	BQ798633	hypothetical protein LOC100265970	-	9e-2	At3g01700	AGP11	C.G.	S.X.	Please select
0.01	8e-1	36	Zea mays	Zm.8519.1.A1_at	BQ635374	hypothetical protein LOC100274605	-	5e+0	At3g11745	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage