CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0416100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os10g0416100 AF350426.1 - Class III chitinase RCB4 (EC 3.2.1.14) 2e+0 At5g11680 unknown protein S.X. H.G.
0.40 51.1 Os04g0618700 AK120799.1 - Protein kinase domain containing protein 2e+0 At3g56210 binding S.X. H.G.
0.02 1.0 Os03g0603600 AK071836.1 - Glycerophosphoryl diester phosphodiesterase familyprotein 2e-4 At5g08030 glycerophosphoryl diester phosphodiesterase family protein S.X. H.G.
0.01 0.5 Os12g0637100 AB066561.1 - Purple acid phosphatase (EC 3.1.3.2) 2e-7 At4g36350 PAP25 (PURPLE ACID PHOSPHATASE 25) S.X. H.G.
0.01 0.5 Os04g0524600 AK069437.1 - Oligopeptide transporter OPT superfamily protein 2e-5 At1g65730 YSL7 (YELLOW STRIPE LIKE 7) S.X. H.G.
0.01 0.5 Os04g0406600 AK103609.1 - Prephenate dehydratase domain containing protein 5e-2 At5g22630 ADT5 (arogenate dehydratase 5) S.X. H.G.
0.01 0.5 Os11g0155100 AK108413.1 - Cyclin-like F-box domain containing protein 2e-1 At2g04020 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.01 0.5 Os02g0534400 AB073749.1 - Cell wall invertase (EC 3.2.1.26) 5e-6 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) S.X. H.G.
0.01 0.5 Os05g0439400 AK121082.1 - U box domain containing protein 3e+0 At1g25054 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.9 99.0 GSM421707 MOCK, 2 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.9 98.8 GSM421670 XOC, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.7 98.6 GSM421709 MOCK, 2 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.2 98.5 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
12.7 98.4 GSM421687 XOO, 2 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.9 98.1 GSM421688 XOO, 2 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.6 98.1 GSM421668 XOC, 2 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.3 98.1 GSM421689 XOO, 2 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.6 97.9 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.0 97.8 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 5e-6 54 Os10g0416800 AK060033.1 - Class III chitinase 1e-1 At1g01500 unknown protein C.G. S.X.
0.08 2e-11 71 Os10g0416500 AK059767.1 - Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulbchitinase-1) (TBC-1) 5e-1 At1g21050 unknown protein C.G. S.X.
0.02 2e-2 42 Os03g0632100 9631.m04176 - - 4e-1 At4g36240 zinc finger (GATA type) family protein C.G. S.X.
0.02 2e-2 42 Os04g0475200 9632.m03792 - - 1e-1 At3g44950 glycine-rich protein C.G. S.X.
0.01 8e-2 40 Os06g0671300 AK108697.1 - Cytochrome P450 family protein 3e+0 At1g01490 heavy-metal-associated domain-containing protein C.G. S.X.
0.01 8e-2 40 Os10g0109700 9638.m00111 - - 5e-2 At1g68570 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g11680 831040 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, plasma membrane;MOFP - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.60067.1.S1_at BG651457 - - 1e-3 At2g41990 unknown protein C.G. S.X.
0.14 3e-7 56 Hordeum vulgare Contig5023_at Contig5023 - - 2e+0 At3g44326 - C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.225863.1.S1_x_at pmrna45497 hypothetical protein - 2e+0 At5g47200 ATRAB1A C.G. S.X.
0.21 6e-35 149 Triticum aestivum TaAffx.108285.1.S1_at CA659617 - - 5e+0 At1g22690 gibberellin-responsive protein, putative C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1618633_at CF568894 - - 7e-14 At1g65060 4CL3 C.G. S.X.
0.38 2e-69 262 Zea mays Zm.9675.1.A1_at BM335265 chitinase 2 - 5e+0 At1g62250 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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