CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0412000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os10g0412000 AK066864.1 - Phospholipid-translocating P-type ATPase, flippasefamily protein 8e-45 At1g59820 ALA3 (Aminophospholipid ATPase3) S.X. H.G.
0.44 58.1 Os10g0428200 AK065193.1 - Conserved hypothetical protein 4e-1 At3g45960 ATEXLA3 (arabidopsis thaliana expansin-like a3) S.X. H.G.
0.19 15.1 Os12g0256300 AK099579.1 - Schizosaccharomyces pombe (Fragment) 6e-43 At1g80930 MIF4G domain-containing protein / MA3 domain-containing protein S.X. H.G.
0.18 13.7 Os06g0638000 CB673746 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 1e-11 At1g21570 zinc finger (CCCH-type) family protein S.X. H.G.
0.11 6.5 Os02g0782600 AK059701.1 - SAC domain protein 1 (FIG4-like protein AtFIG4) 1e-11 At1g22620 ATSAC1 (suppressor of actin 1) S.X. H.G.
0.05 2.5 Os01g0857000 AK119434.1 - Double-stranded RNA binding domain containingprotein 6e-15 At5g01270 CPL2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.2 98.0 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
4.7 96.4 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.4 96.2 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
4.1 96.0 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
3.9 95.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.8 95.7 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.8 95.7 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.6 95.5 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.6 95.5 GSM262019 Nipponbare, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.5 95.3 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 42 Os06g0565900 AK066838.1 - - 2e-48 At1g72700 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.02 4e-2 42 Os06g0488600 AK058968.1 - Hypothetical protein 5e-24 At3g27870 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.01 1e-11 73 Os03g0326000 AK059185.1 - Phospholipid-transporting ATPase 1 (EC 3.6.3.1)(Aminophospholipid flippase 1) 7e+0 At3g61678 unknown protein C.G. S.X.
0.01 2e+0 36 Os03g0161400 CB658382 - IQ calmodulin-binding region domain containingprotein 3e+0 At3g30222 unknown protein C.G. S.X.
0.01 2e+0 36 Os08g0379200 AK108698.1 - Hypothetical protein 2e-12 At1g68710 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.01 2e+0 36 Os11g0143600 9640.m00369 - Hypothetical protein 2e+0 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 8e-45 182 Arabidopsis thaliana At1g59820 842275 ALA3 (Aminophospholipid ATPase3) Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower. - - - C.G. S.X.
0.04 1e-4 50 Glycine max Gma.3765.1.S1_at BI892781 - - 2e-10 At1g59820 ALA3 (Aminophospholipid ATPase3) C.G. S.X.
0.35 6e-121 434 Hordeum vulgare Contig17633_at Contig17633 - - 8e-6 At1g59820 ALA3 (Aminophospholipid ATPase3) C.G. S.X.
0.23 5e-59 230 Populus trichocarpa PtpAffx.208703.1.S1_at pmrna17262 aminophospholipid ATPase - 0 At1g59820 ALA3 (Aminophospholipid ATPase3) C.G. S.X.
0.57 0 753 Triticum aestivum TaAffx.129138.1.S1_s_at CK171378 - - 3e-44 At1g59820 ALA3 (Aminophospholipid ATPase3) C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1622279_at CF200642.1 - - 3e+0 At5g50375 CPI1 (CYCLOPROPYL ISOMERASE) C.G. S.X.
0.06 8e-9 61 Zea mays Zm.12902.1.A1_at CA401314 - - 4e+0 At5g50570 squamosa promoter-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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