CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0411800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.72 89.8 Os10g0411800 AK059434.1 - Ribosomal protein S17 7e-9 At5g04800 40S ribosomal protein S17 (RPS17D) S.X. H.G.
0.85 96.1 Os12g0508300 AK059123.1 - Conserved hypothetical protein 2e-20 At4g33865 40S ribosomal protein S29 (RPS29C) S.X. H.G.
0.84 96.0 Os01g0834500 AK058829.1 - 40S ribosomal protein S23 1e-93 At5g02960 40S ribosomal protein S23 (RPS23B) S.X. H.G.
0.83 95.8 Os02g0284600 AK121593.1 - 60S ribosomal protein L27 3e-11 At4g15000 60S ribosomal protein L27 (RPL27C) S.X. H.G.
0.82 95.0 Os08g0116500 AK060433.1 - 60S acidic ribosomal protein P1 (L12) 1e-3 At2g27720 60S acidic ribosomal protein P2 (RPP2A) S.X. H.G.
0.81 94.8 Os05g0160200 L31941.1 - The start codon is not identified. 6e-74 At2g47110 UBQ6 S.X. H.G.
0.81 94.8 Os02g0797200 AK120800.1 - 60S ribosomal protein L39 6e-11 At3g02190 60S ribosomal protein L39 (RPL39B) S.X. H.G.
0.68 87.5 Os01g0328400 AK061988.1 - Ubiquitin 7e-66 At2g47110 UBQ6 S.X. H.G.
0.68 87.5 Os09g0485900 AK064936.1 - 60S ribosomal protein L9 (Gibberellin-regulatedprotein GA) 5e-23 At1g33140 PGY2 (PIGGYBACK2) S.X. H.G.
0.65 83.8 Os03g0337800 AK102721.1 - 60S ribosomal protein L19 (Fragment) 2e-43 At1g02780 emb2386 (embryo defective 2386) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 95.8 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.9 95.8 GSM261998 IAC165, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.6 95.5 GSM281584 Rice Zhonghua11, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
3.6 95.5 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.6 95.5 GSM281586 Rice mutant dst, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
3.5 95.3 GSM281583 Rice Zhonghua11, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
3.2 94.9 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
3.2 94.9 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.1 94.8 GSM262001 IAC165, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.1 94.8 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-3 44 Os03g0347500 AK109114.1 - MtN3-like protein 5e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) C.G. S.X.
0.02 3e-3 44 Os07g0558400 AF058796.1 - Chlorophyll a/b-binding protein CP29 precursor 2e-50 At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) C.G. S.X.
0.02 3e-3 44 Os11g0148000 AK108267.1 - Sodium/calcium exchanger membrane region domaincontaining protein 8e+0 At4g35450 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 7e-9 61 Arabidopsis thaliana At5g04800 830359 40S ribosomal protein S17 (RPS17D) F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MOAFP - - - C.G. S.X.
0.34 4e-42 173 Glycine max Gma.16574.1.S1_at BE823590 - - 4e-56 At5g04800 40S ribosomal protein S17 (RPS17D) C.G. S.X.
0.45 9e-124 442 Hordeum vulgare Contig2342_at Contig2342 - - 3e-14 At5g04800 40S ribosomal protein S17 (RPS17D) C.G. S.X.
0.15 4e-2 40 Populus trichocarpa PtpAffx.213427.1.S1_at pmrna26255 hypothetical protein - 2e-38 At2g05220 40S ribosomal protein S17 (RPS17B) C.G. S.X.
0.41 5e-84 311 Triticum aestivum TaAffx.113035.1.S1_s_at CA625116 - - 1e-12 At3g10610 40S ribosomal protein S17 (RPS17C) C.G. S.X.
0.24 2e-15 81 Vitis vinifera 1618317_at CB972677 hypothetical protein LOC100243000 - 3e-45 At2g05220 40S ribosomal protein S17 (RPS17B) C.G. S.X.
0.42 4e-132 470 Zea mays Zm.6207.4.A1_at BQ538453 Hypothetical protein LOC100194345 - 6e-19 At2g04390 40S ribosomal protein S17 (RPS17A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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