CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0392400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 91.4 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) S.X. H.G.
0.57 77.0 Os01g0135700 AK062711.1 - Flagellar calcium-binding protein (calflagin)family protein 6e-1 At1g76820 GTP binding / GTPase S.X. H.G.
0.54 71.9 Os05g0497300 AK111755.1 - Ethylene responsive element binding factor 5(AtERF5) 4e-14 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) S.X. H.G.
0.47 62.3 Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein S.X. H.G.
0.47 62.3 Os09g0486500 AF140722.2 - Multiple stress-responsive zinc-finger protein(Multiple stress- associated zinc-finger protein) 2e+0 At5g24290 integral membrane family protein S.X. H.G.
0.46 60.9 Os03g0761100 AK066083.1 - Protein phosphatase 2C-like protein 6e-8 At4g33920 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
0.40 51.1 Os07g0685700 AB074972.1 - Ethylene insensitive 3 family protein 2e-2 At1g56170 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2) S.X. H.G.
0.38 46.9 Os05g0343400 AK121190.1 - WRKY transcription factor 53 (Transcription factorWRKY12) 3e-7 At5g07100 WRKY26 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.9 98.0 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
8.6 97.8 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
8.5 97.7 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
8.2 97.7 GSM154947 Leaf_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
8.0 97.6 GSM154945 Leaf_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
7.8 97.6 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
7.7 97.6 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
7.7 97.6 GSM154952 Leaf_DMSO-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
7.7 97.6 GSM154953 Leaf_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
7.5 97.5 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 4e-9 63 Os03g0180900 AK073589.1 - ZIM domain containing protein 1e-1 At3g22275 unknown protein C.G. S.X.
0.07 6e-8 59 Os03g0180800 AK070649.1 - ZIM domain containing protein 5e-1 At2g35960 NHL12 C.G. S.X.
0.07 1e-6 56 Os03g0181100 AK120087.1 - ZIM domain containing protein 2e+0 At3g59370 unknown protein C.G. S.X.
0.07 2e-5 52 Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 C.G. S.X.
0.06 1e-3 46 Os07g0153000 AU082861 - ZIM domain containing protein 5e+0 At5g50480 NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6) C.G. S.X.
0.04 6e-5 50 Os12g0472800 AK063278.1 - Hypothetical protein 3e-3 At5g65390 AGP7 C.G. S.X.
0.01 1e-3 46 Os03g0291800 AK070365.1 - - 2e-2 At2g40150 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At5g56320 835731 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) - - - C.G. S.X.
0.02 4e-2 40 Glycine max PsAffx.C173000025_at PsAffx.C173000025 - - 4e-2 At4g32551 LUG (LEUNIG) C.G. S.X.
0.09 4e-6 52 Hordeum vulgare Contig11225_at Contig11225 - - 7e+0 At5g13220 JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.692.36.S1_at CK097610 hypothetical protein - 5e-1 At5g67490 unknown protein C.G. S.X.
0.13 2e-6 54 Triticum aestivum Ta.14172.1.S1_at CA643444 - - 1e+1 At3g04880 DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2) C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1615168_at CF602900 hypothetical protein LOC100250140 - 4e+0 At4g31580 SRZ-22 C.G. S.X.
0.20 1e-11 69 Zea mays Zm.8525.1.A1_at BM074538 pnFL-2 - 1e-1 At3g22275 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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