CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0391400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 S.X. H.G.
0.67 87.2 Os08g0474000 AK062882.1 - AP2 domain containing protein RAP2.6 (Fragment) 1e-4 At1g22985 AP2 domain-containing transcription factor, putative S.X. H.G.
0.60 79.7 Os11g0151400 AK106404.1 - Cytochrome P450 family protein 9e-1 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) S.X. H.G.
0.55 73.7 Os03g0734500 AK108001.1 - Conserved hypothetical protein 3e-1 At2g35710 glycogenin glucosyltransferase (glycogenin)-related S.X. H.G.
0.50 68.0 Os03g0181100 AK120087.1 - ZIM domain containing protein 2e+0 At3g59370 unknown protein S.X. H.G.
0.35 41.7 Os01g0186900 AK120573.1 - Hypothetical protein 4e-1 At3g04310 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.7 99.5 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
24.2 99.4 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
23.1 99.3 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
16.4 98.8 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
13.2 98.4 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
11.3 98.2 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.2 98.2 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.9 98.1 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.2 98.0 GSM154947 Leaf_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
10.0 98.0 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-5 50 Os03g0181100 AK120087.1 - ZIM domain containing protein 2e+0 At3g59370 unknown protein C.G. S.X.
0.09 5e-8 59 Os03g0180900 AK073589.1 - ZIM domain containing protein 1e-1 At3g22275 unknown protein C.G. S.X.
0.07 1e-5 52 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) C.G. S.X.
0.05 5e-5 50 Os03g0180800 AK070649.1 - ZIM domain containing protein 5e-1 At2g35960 NHL12 C.G. S.X.
0.03 2e-4 48 Os09g0433000 AK063243.1 - Conserved hypothetical protein 4e+0 At2g42360 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 8e-4 46 Os01g0299700 AK108504.1 - 3'-5' exonuclease domain containing protein 3e+0 At2g44700 kelch repeat-containing F-box family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Arabidopsis thaliana At3g01700 821093 AGP11 Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth. - - - C.G. S.X.
0.04 1e-1 38 Glycine max HgAffx.13280.1.S1_at CB374702 - - 5e+0 At5g42330 unknown protein C.G. S.X.
0.17 4e-21 101 Hordeum vulgare Contig4814_at Contig4814 - - 1e+0 At3g60530 zinc finger (GATA type) family protein C.G. S.X.
0.04 6e-1 36 Populus trichocarpa Ptp.2732.1.S1_at DN502621 hypothetical protein - 2e-5 At4g21980 APG8A (AUTOPHAGY 8A) C.G. S.X.
0.17 5e-19 95 Triticum aestivum TaAffx.132281.2.S1_x_at CK212051 - - 6e+0 At1g70700 TIFY7 C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1608815_at CB347086 - - 8e+0 At5g60810 unknown protein C.G. S.X.
0.12 3e-3 42 Zea mays Zm.10850.1.S1_at AY106263.1 ZIM motif family protein - 8e-1 At5g40420 OLEO2 (OLEOSIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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