CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0390800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 88.4 Os10g0390800 AK110269.1 - - 2e-4 At1g22985 AP2 domain-containing transcription factor, putative S.X. H.G.
0.96 99.7 Os12g0197100 AK071816.1 - Phosphoribosylamine--glycine ligase, chloroplastprecursor (EC 6.3.4.13) (GARS) (Glycinamideribonucleotide synthetase) (Phosphoribosylglycinamidesynthetase) 5e-15 At1g09830 phosphoribosylamine--glycine ligase (PUR2) S.X. H.G.
0.92 99.1 Os05g0578500 AK062591.1 - Conserved hypothetical protein 7e-1 At1g62240 unknown protein S.X. H.G.
0.91 98.9 Os06g0683800 AK110639.1 - Hypothetical protein 1e+0 At5g21020 - S.X. H.G.
0.91 98.9 Os12g0541300 9640.m03446 - Respiratory burst oxidase homolog 2e-3 At1g09090 ATRBOHB (respiratory burst oxidase homolog B) S.X. H.G.
0.87 96.6 Os02g0467600 AK072588.1 - Cinnamate 4-hydroxylase CYP73 1e-2 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) S.X. H.G.
0.87 96.6 Os01g0847100 AK063795.1 - Hypothetical protein 4e-1 At5g16430 - S.X. H.G.
0.86 96.4 Os07g0194500 AK121816.1 - 2OG-Fe(II) oxygenase domain containing protein 4e-2 At5g18900 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.83 95.8 Os08g0152000 9636.m00490 - - 6e-4 At2g29870 major intrinsic family protein / MIP family protein S.X. H.G.
0.83 95.8 Os08g0178500 AK107865.1 - Conserved hypothetical protein 4e+0 At4g34410 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.8 99.9 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
59.2 99.9 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
52.3 99.9 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
42.6 99.9 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
33.1 99.8 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
28.8 99.6 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
12.0 98.3 GSM359916 IR63731 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.7 98.0 GSM359918 IR63731 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.1 97.9 GSM359905 FL478 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.0 97.0 GSM359903 FL478 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-16 87 Os03g0183300 AK058349.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 4e+0 At5g46873 - C.G. S.X.
0.07 4e-16 87 Os01g0657400 AY323486.1 - Ethylene responsive element binding factor 5(AtERF5) 9e-3 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) C.G. S.X.
0.06 2e-18 95 Os01g0313300 AK111775.1 - Transcription factor EREBP1 2e-6 At3g14230 RAP2.2 C.G. S.X.
0.06 6e-15 83 Os07g0674800 AY297447.1 - AP2 domain containing protein RAP2.2 (Fragment) 8e-3 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) C.G. S.X.
0.05 4e-19 97 Os05g0437100 9633.m03366 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-6 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.04 4e-16 87 Os01g0224100 AK106517.1 - Ethylene-responsive element binding factor 4e-3 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) C.G. S.X.
0.03 2e-17 91 Os08g0537900 AK119425.1 - AP2 domain containing protein RAP2.2 (Fragment) 6e-12 At1g52630 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-4 48 Arabidopsis thaliana At1g22985 838906 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. - - - C.G. S.X.
0.05 4e-9 63 Glycine max GmaAffx.60303.1.S1_at BM886518 - - 7e-11 At1g22985 AP2 domain-containing transcription factor, putative C.G. S.X.
0.11 9e-14 77 Hordeum vulgare Contig6526_at Contig6526 - - 7e-1 At5g11550 binding C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.207270.1.S1_at pmrna14427 AP2/ERF domain-containing transcription factor - 1e-3 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.11 1e-11 71 Triticum aestivum Ta.10130.1.S1_at CK198845 - - 8e-1 At2g40220 ABI4 (ABA INSENSITIVE 4) C.G. S.X.
0.04 2e-1 36 Vitis vinifera 1613698_at CF403989 hypothetical protein LOC100242632 - 7e-6 At5g51190 AP2 domain-containing transcription factor, putative C.G. S.X.
0.06 2e-20 99 Zea mays Zm.11441.1.S1_at AY672654.1 ethylene-responsive factor-like protein 1 - 2e+0 At3g14230 RAP2.2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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