CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0345500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os10g0345500 NM_195897.1 - - 1e+0 At5g14740 CA2 (CARBONIC ANHYDRASE 2) S.X. H.G.
0.61 81.2 Os01g0496300 9629.m02894 - - 9e+0 At3g43430 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.56 76.3 Os01g0195700 NM_188237.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e+0 At3g02860 zinc ion binding S.X. H.G.
0.55 73.7 Os07g0141300 NM_186246.1 - - 7e+0 At5g26890 unknown protein S.X. H.G.
0.50 68.0 Os09g0524500 AK119967.1 - Hypothetical protein 3e+0 At1g63245 CLE14 (CLAVATA3/ESR-RELATED 14) S.X. H.G.
0.44 58.1 Os04g0573700 9632.m04694 - - 9e-1 At2g21320 zinc finger (B-box type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.7 99.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
34.2 99.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.8 99.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.7 99.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.6 99.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.7 99.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.6 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.5 99.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.4 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 8e-34 145 Os01g0181400 NM_190755.1 - - 2e+0 At1g27950 LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1) C.G. S.X.
0.11 2e-87 323 Os03g0136400 AK121484.1 - Inorganic phosphate transporter 1 6e-9 At5g43340 PHT6 C.G. S.X.
0.11 1e-17 91 Os02g0173300 AK107829.1 - - 2e+0 At4g11430 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.07 1e-7 57 Os08g0564000 AK119787.1 - Phosphate transporter 6 1e-12 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
0.06 1e-7 57 Os10g0444700 AK069054.1 - Phosphate transporter 6 9e-14 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g14740 831326 CA2 (CARBONIC ANHYDRASE 2) Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. - - - C.G. S.X.
0.03 4e-1 36 Glycine max Gma.1704.1.S1_at AW349971 - - 2e-6 At1g28480 GRX480 C.G. S.X.
0.11 1e-11 69 Hordeum vulgare Contig7944_at Contig7944 - - 1e-1 At5g43370 APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) C.G. S.X.
0.04 6e+0 32 Populus trichocarpa PtpAffx.218567.1.S1_at pmrna34229 hypothetical protein - 2e-1 At1g26300 BSD domain-containing protein C.G. S.X.
0.05 8e-5 48 Triticum aestivum Ta.10084.1.S1_at AF110180.1 high-affinity phosphate transporter PT1 - 3e-7 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1620442_at CB971589 hypothetical protein LOC100266848 - 1e-15 At3g02110 scpl25 (serine carboxypeptidase-like 25) C.G. S.X.
0.07 5e-7 54 Zea mays Zm.1921.1.S1_at AY108469.1 inorganic phosphate transporter 3 - 3e-16 At5g43340 PHT6 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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