CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0344000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os10g0344000 AK105578.1 - Multi antimicrobial extrusion protein MatE familyprotein 6e-2 At5g52450 MATE efflux protein-related S.X. H.G.
0.59 78.0 Os01g0561600 AK069494.1 - Cytochrome P450 family protein 4e+0 At1g54740 - S.X. H.G.
0.59 78.0 Os01g0696800 AK061435.1 - - 3e+0 At2g32710 KRP4 S.X. H.G.
0.57 77.0 Os01g0373800 AK107432.1 - Conserved hypothetical protein 1e+0 At2g36885 unknown protein S.X. H.G.
0.53 71.3 Os01g0373700 AK107857.1 - Conserved hypothetical protein 5e+0 At5g59840 Ras-related GTP-binding family protein S.X. H.G.
0.47 62.3 Os10g0468500 AK110897.1 - Protein kinase domain containing protein 2e-6 At1g17230 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
96.2 100.0 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
79.7 99.9 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
55.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.2 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.1 97.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2 96.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 9e-178 624 Os10g0344900 AK073245.1 - Multi antimicrobial extrusion protein MatE familyprotein 2e-1 At5g52450 MATE efflux protein-related C.G. S.X.
0.30 4e-81 303 Os10g0345100 AK069792.1 - Multi antimicrobial extrusion protein MatE familyprotein 1e+0 At1g15180 MATE efflux family protein C.G. S.X.
0.29 2e-34 149 Os06g0494400 AK067594.1 - Multi antimicrobial extrusion protein MatE familyprotein 1e-3 At5g52450 MATE efflux protein-related C.G. S.X.
0.23 3e-29 131 Os06g0495500 AK109873.1 - Multi antimicrobial extrusion protein MatE familyprotein 6e-5 At2g34360 antiporter/ drug transporter/ transporter C.G. S.X.
0.22 4e-26 121 Os02g0294800 9630.m01834 - - 4e-1 At1g42710 - C.G. S.X.
0.20 4e-32 141 Os10g0190900 AK070457.1 - - 5e-5 At2g34360 antiporter/ drug transporter/ transporter C.G. S.X.
0.20 1e-31 139 Os04g0373400 9632.m02891 - Multi antimicrobial extrusion protein MatE familyprotein 2e-4 At5g52450 MATE efflux protein-related C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-2 40 Arabidopsis thaliana At5g52450 835321 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:plasma membrane, membrane;BOPFAM - - - C.G. S.X.
0.03 2e-2 42 Glycine max Gma.3436.1.S1_at BQ628716 - - 2e-1 At5g08330 TCP family transcription factor, putative C.G. S.X.
0.14 3e-8 59 Hordeum vulgare Contig15296_s_at Contig15296 - - 9e-1 At1g66780 MATE efflux family protein C.G. S.X.
0.02 8e-2 40 Populus trichocarpa PtpAffx.202602.1.S1_at pmrna5210 hypothetical protein - 1e-8 At2g04080 MATE efflux family protein C.G. S.X.
0.07 6e-8 59 Triticum aestivum Ta.27140.1.S1_at BT009218.1 - - 6e-2 At3g23560 ALF5 (ABERRANT LATERAL ROOT FORMATION 5) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1618277_at CF568829 hypothetical protein LOC100265689 - 3e-48 At1g79530 GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) C.G. S.X.
0.03 3e-8 59 Zea mays Zm.1028.1.S1_at BM380738 hypothetical protein LOC100274540 - 1e-15 At3g21690 MATE efflux family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage