CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0184300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os10g0184300 AK058856.1 - Hypothetical protein 1e-28 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) S.X. H.G.
0.67 87.2 Os11g0127700 AK103742.1 - Hypothetical protein 2e-1 At1g49480 RTV1 (related to vernalization1 1) S.X. H.G.
0.67 87.2 Os12g0123900 AK061862.1 - Hypothetical protein 3e+0 At5g27690 heavy-metal-associated domain-containing protein S.X. H.G.
0.67 87.2 Os06g0662000 AK071775.1 - Vacuolar ATP synthase catalytic subunit A (EC3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pumpalpha subunit) (V-ATPase 69 kDa subunit) 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) S.X. H.G.
0.50 68.0 Os05g0593100 AK061855.1 - Vacuolar ATP synthase subunit C (EC 3.6.3.14)(V-ATPase C subunit) (Vacuolar proton pump C subunit) 2e-10 At1g12840 DET3 (DE-ETIOLATED 3) S.X. H.G.
0.40 51.1 Os12g0168900 AK071641.1 - - 4e-51 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 96.0 GSM359920 Pokkali root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
4.0 95.9 GSM359903 FL478 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.5 95.3 GSM359913 IR63731 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.2 94.9 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.1 94.8 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.1 94.8 GSM359914 IR63731 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.0 94.6 GSM359923 Pokkali root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.0 94.6 GSM359902 FL478 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.0 94.6 GSM359922 Pokkali root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.0 94.6 GSM359919 Pokkali root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 0 997 Os03g0251500 AK119298.1 - Vacuolar proton-ATPase subunit-like protein 8e-18 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) C.G. S.X.
0.06 5e-14 81 Os01g0834200 AK100543.1 - The start codon is not identified. 2e-15 At2g28520 VHA-A1 (VACUOLAR PROTON ATPASE A 1) C.G. S.X.
0.01 4e-2 42 Os12g0581800 AK110937.1 - Cyclin domain containing protein 6e-5 At1g77390 CYCA1 C.G. S.X.
0.01 2e-1 40 Os09g0375300 9637.m01786 - Protein of unknown function DUF231 domaincontaining protein 3e-2 At2g14530 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-28 129 Arabidopsis thaliana At4g39080 830063 VHA-A3 (VACUOLAR PROTON ATPASE A3) Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast. - - - C.G. S.X.
0.10 4e-20 101 Glycine max GmaAffx.44141.1.S1_at AW756248 - - 1e-15 At2g21410 VHA-A2 (VACUOLAR PROTON ATPASE A2) C.G. S.X.
0.51 0 728 Hordeum vulgare Contig4247_at Contig4247 - - 1e-40 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) C.G. S.X.
0.35 2e-31 139 Populus trichocarpa PtpAffx.204593.1.S1_at pmrna9017 hypothetical protein - 1e-111 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) C.G. S.X.
0.15 4e-44 180 Triticum aestivum Ta.7589.1.S1_at BJ261543 - - 1e-17 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) C.G. S.X.
0.06 8e-15 81 Vitis vinifera 1611694_at CB972078 hypothetical protein LOC100258865 - 2e-24 At2g21410 VHA-A2 (VACUOLAR PROTON ATPASE A2) C.G. S.X.
0.38 2e-81 303 Zea mays Zm.12750.1.S1_a_at CA402457 - - 9e-16 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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