CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0133500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 93.4 Os10g0133500 AK066866.1 - Transferase family protein 4e-3 At4g36780 transcription regulator S.X. H.G.
0.50 68.0 Os05g0113200 AK110680.1 - Hypothetical protein 7e+0 At2g20784 unknown protein S.X. H.G.
0.40 51.1 Os06g0340900 9634.m02296 - - 6e-1 At4g11175 translation initiation factor IF-1, chloroplast, putative S.X. H.G.
0.32 36.3 Os08g0122266 9636.m00192 - - 1e+0 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) S.X. H.G.
0.12 7.2 Os10g0379000 9638.m01982 - - 6e-1 At5g60590 yrdC protein-related S.X. H.G.
0.12 7.2 Os02g0778600 AK106971.1 - - 2e-2 At3g43860 AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4) S.X. H.G.
0.10 5.7 Os11g0619800 AK107437.1 - BTB/POZ domain containing protein 3e+0 At3g55790 unknown protein S.X. H.G.
0.08 4.2 Os01g0698900 9629.m04872 - Nascent polypeptide associated complex alpha chain 8e-4 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.7 99.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
36.6 99.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.9 99.8 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.7 99.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.8 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.3 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.7 99.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.3 99.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.8 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 4e-171 603 Os10g0133400 9638.m00349 - - 8e+0 At2g15830 unknown protein C.G. S.X.
0.12 2e-24 115 Os10g0195600 AK100207.1 - Transferase family protein 4e+0 At2g42380 bZIP transcription factor family protein C.G. S.X.
0.09 3e-17 91 Os07g0421600 9635.m02286 - - 7e-1 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.08 1e-7 59 Os10g0106750 NM_194527.1 - - 1e+1 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) C.G. S.X.
0.05 8e-9 63 Os04g0213400 9636.m01647 - - 2e+0 At1g06930 unknown protein C.G. S.X.
0.04 2e-9 65 Os03g0659600 9631.m04431 - - 1e+1 At4g35410 clathrin adaptor complex small chain family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-3 44 Arabidopsis thaliana At4g36780 829831 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;PF - - - C.G. S.X.
0.02 2e-2 42 Glycine max GmaAffx.10118.1.S1_at BQ081339 - - 2e-1 At5g67490 unknown protein C.G. S.X.
0.04 1e-4 48 Hordeum vulgare Contig6769_at Contig6769 - - 9e-7 At5g48930 HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE) C.G. S.X.
0.02 8e-2 40 Populus trichocarpa PtpAffx.106453.1.A1_at BP934550 - - 5e+0 At5g65050 AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31) C.G. S.X.
0.05 2e-4 48 Triticum aestivum Ta.14063.2.S1_at BE515450 - - 3e+1 At5g09340 ubiquitin, putative C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1619140_at CF606031 hypothetical protein LOC100246049 - 4e-4 At2g35270 DNA-binding protein-related C.G. S.X.
0.03 1e-1 38 Zea mays Zm.3238.1.A1_at AW331095 - - 3e-6 At2g18300 basic helix-loop-helix (bHLH) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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