CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0122500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os10g0122500 NM_194664.1 - Transferase family protein 6e-1 At1g71120 GLIP6 S.X. H.G.
0.60 79.7 Os01g0795700 AK067879.1 - Hypothetical protein 1e+0 At3g27900 unknown protein S.X. H.G.
0.46 60.9 Os01g0588100 9629.m03872 - - 5e-1 At2g22800 HAT9 S.X. H.G.
0.40 51.1 Os11g0225000 AK062328.1 - Serine/threonine protein kinase domain containingprotein 1e+0 At5g13900 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.40 51.1 Os11g0666100 AK109326.1 - Hypothetical protein 6e+0 At4g00950 MEE47 (maternal effect embryo arrest 47) S.X. H.G.
0.38 46.9 Os04g0567200 AK110383.1 - Protein of unknown function UPF0005 family protein 3e-4 At4g17970 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.8 99.9 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
43.0 99.9 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
26.6 99.5 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
24.7 99.4 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
23.0 99.3 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
18.2 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
18.0 98.9 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
16.0 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 7e-21 103 Os10g0108700 AK060060.1 - Transferase family protein 1e+1 At5g50460 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.14 3e-17 91 Os10g0107400 9638.m00084 - - 2e+0 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.14 6e-15 83 Os04g0194400 9632.m01055 - Transferase family protein 1e+1 At3g01513 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At1g71120 843452 GLIP6 Contains lipase signature motif and GDSL domain. - - - C.G. S.X.
0.02 9e-1 36 Glycine max PsAffx.CL439Contig1_at PsAffx.CL439Contig1 - - 2e-1 At1g02710 glycine-rich protein C.G. S.X.
0.23 1e-68 260 Hordeum vulgare HV_CEb0016H05f2_at HV_CEb0016H05f2 - - 4e-1 At3g29575 AFP3 (ABI FIVE BINDING PROTEIN 3) C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.221456.1.S1_at pmrna38352 hypothetical protein - 1e+0 At1g57610 unknown protein C.G. S.X.
0.08 1e-2 42 Triticum aestivum TaAffx.77473.1.A1_at CA747342 - - 5e+0 At1g74990 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1613283_at CB346926 - - 2e-1 At3g46230 ATHSP17.4 C.G. S.X.
0.05 5e-3 42 Zea mays Zm.18284.1.A1_at BG873939 hypothetical protein LOC100191290 - 5e+0 At5g11830 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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