CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os10g0108700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os10g0108700 AK060060.1 - Transferase family protein 1e+1 At5g50460 protein transport protein SEC61 gamma subunit, putative S.X. H.G.
0.43 55.4 Os09g0125900 AK065634.1 - ATP-binding cassette, sub-family G, member 1(White protein homolog) (ATP-binding cassette transporter8). Splice isoform 3 6e-2 At1g51500 CER5 (ECERIFERUM 5) S.X. H.G.
0.38 46.9 Os03g0382100 9631.m02606 - Naringenin-chalcone synthase family protein 7e-1 At2g28630 KCS12 (3-KETOACYL-COA SYNTHASE 12) S.X. H.G.
0.30 32.7 Os04g0401100 AK061279.1 - Conserved hypothetical protein 2e+0 At5g62950 catalytic/ nucleotide binding S.X. H.G.
0.29 31.1 Os01g0842400 AK068901.1 - Laccase (EC 1.10.3.2) 7e-5 At2g38080 IRX12 (IRREGULAR XYLEM 12) S.X. H.G.
0.27 27.5 Os09g0445500 AK120514.1 - Zn-finger, C2H2 type domain containing protein 7e-1 At2g44080 ARL (ARGOS-LIKE) S.X. H.G.
0.26 25.6 Os09g0373200 AK109686.1 - Strictosidine synthase family protein 2e-1 At5g20540 ATBRXL4 (BREVIS RADIX-LIKE 4) S.X. H.G.
0.25 24.1 Os04g0353600 CB641510 - Male sterility protein family protein 2e+0 At1g35333 unknown protein S.X. H.G.
0.25 24.1 Os11g0641800 AK066963.1 - Multicopper oxidase, type 1 domain containingprotein 3e-1 At2g38080 IRX12 (IRREGULAR XYLEM 12) S.X. H.G.
0.23 21.2 Os06g0314600 AK067321.1 - Floral nectary-specific protein 2e-1 At1g15125 S-adenosylmethionine-dependent methyltransferase/ methyltransferase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.2 GSM431936 Shoot- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
19.5 99.1 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.9 97.6 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.8 97.6 GSM421709 MOCK, 2 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.9 97.3 GSM421669 XOC, 2 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.7 97.3 GSM421684 XOC, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.7 97.3 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.6 97.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 1e-68 262 Os10g0107400 9638.m00084 - - 2e+0 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.29 8e-21 103 Os10g0122500 NM_194664.1 - Transferase family protein 6e-1 At1g71120 GLIP6 C.G. S.X.
0.09 3e-8 61 Os04g0172400 AK064755.1 - Transferase family protein 2e-1 At2g38480 integral membrane protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+1 32 Arabidopsis thaliana At5g50460 835114 protein transport protein SEC61 gamma subunit, putative F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport, protein targeting;C:membrane;MFOPA - - - C.G. S.X.
0.02 1e+0 36 Glycine max PsAffx.psMY011iF07r_at PsAffx.psMY011iF07r - - 8e+0 At5g49560 unknown protein C.G. S.X.
0.06 1e-7 57 Hordeum vulgare HV_CEb0016H05f2_at HV_CEb0016H05f2 - - 4e-1 At3g29575 AFP3 (ABI FIVE BINDING PROTEIN 3) C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.222997.1.S1_at pmrna40765 - - 2e-102 Atmg00060 - C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.109765.2.S1_at CA669372 - - 4e-3 At3g17100 transcription factor C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1617697_at CD714002 - - 1e-25 At4g27800 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) C.G. S.X.
0.02 2e-2 40 Zea mays Zm.18284.1.A1_at BG873939 hypothetical protein LOC100191290 - 5e+0 At5g11830 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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