CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0569400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os09g0569400 AK063384.1 - RNA-metabolising metallo-beta-lactamase domaincontaining protein 7e-21 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) S.X. H.G.
0.91 98.9 Os04g0484800 AK068962.1 - Cullin family protein 6e-31 At2g04660 APC2 S.X. H.G.
0.71 89.6 Os11g0572100 AB109200.1 - DNA ligase (EC 6.5.1.2) 1e-20 At5g22010 AtRFC1 (replication factor C 1) S.X. H.G.
0.44 58.1 Os04g0101300 CB627192 - MRG family protein 1e-1 At1g02740 chromatin binding S.X. H.G.
0.35 41.7 Os03g0347200 AY017415.1 - Initiation factor eIF-4 gamma, middle domaincontaining protein 3e-8 At2g13540 ABH1 (ABA HYPERSENSITIVE 1) S.X. H.G.
0.32 36.3 Os11g0643700 CB632735 - Nuclear pore protein 84/107 family protein 6e+0 Atmg00150 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.9 98.0 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
9.6 97.9 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
6.7 97.3 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.2 97.1 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.9 97.0 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.8 97.0 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.6 96.9 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
5.0 96.6 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.9 96.5 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.5 96.3 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 40 Os07g0110400 AK058681.1 - ARM repeat fold domain containing protein 1e-17 At5g15540 EMB2773 (EMBRYO DEFECTIVE 2773) C.G. S.X.
0.01 6e-1 38 Os06g0295500 AK119433.1 - Hypothetical protein 3e-2 At5g66815 unknown protein C.G. S.X.
0.01 6e-1 38 Os06g0295600 9634.m01851 - - 9e-2 At4g27310 zinc finger (B-box type) family protein C.G. S.X.
0.01 6e-1 38 Os08g0383901 9636.m02930 - - 2e+0 At2g21970 SEP2 (STRESS ENHANCED PROTEIN 2) C.G. S.X.
0.01 3e+0 36 Os02g0228400 AK111683.1 - Conserved hypothetical protein 3e-4 At5g61350 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 7e-21 103 Arabidopsis thaliana At5g23880 832453 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus. - - - C.G. S.X.
0.04 3e-5 52 Glycine max GmaAffx.24635.1.A1_at CD418601 - - 9e-23 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.28 1e-153 543 Hordeum vulgare Contig16128_at Contig16128 - - 7e-15 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.17 2e-15 85 Populus trichocarpa PtpAffx.103932.1.S1_at CX175756 - - 5e-20 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.22 2e-116 420 Triticum aestivum Ta.12414.1.S1_at BQ172285 - - 2e-9 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1615452_at CB345337 hypothetical protein LOC100255210 - 1e-25 At3g55200 splicing factor, putative C.G. S.X.
0.08 4e-20 99 Zea mays Zm.4238.1.A1_at BM073006 cleavage and polyadenylation specificity factor, 100 kDa subunit - 8e-1 At2g14282 SCRL18 (SCR-Like 18) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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