CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0558600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os09g0558600 AK064751.1 - Conserved hypothetical protein 7e-1 At5g60460 sec61beta family protein S.X. H.G.
0.74 91.4 Os01g0157001 9629.m00566 - - 6e-1 At1g65270 unknown protein S.X. H.G.
0.73 91.1 Os08g0562000 9636.m04569 - - 4e+0 At5g24560 AtPP2-B12 (Phloem protein 2-B12) S.X. H.G.
0.64 83.4 Os08g0165700 9635.m00582 - - 3e+0 At3g09900 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) S.X. H.G.
0.63 82.7 Os04g0523500 9632.m04244 - - 2e-1 At5g41390 - S.X. H.G.
0.63 82.7 Os01g0848000 NM_190602.1 - - 4e+0 At3g02860 zinc ion binding S.X. H.G.
0.59 78.0 Os08g0199500 9636.m00954 - - 3e+0 At2g32788 - S.X. H.G.
0.55 73.7 Os02g0542600 AK110826.1 - Hypothetical protein 1e-2 At5g44820 unknown protein S.X. H.G.
0.52 69.6 Os08g0188300 9636.m00841 - - 1e+0 At2g40510 40S ribosomal protein S26 (RPS26A) S.X. H.G.
0.50 68.0 Os07g0514600 9635.m03253 - - 6e-2 At5g39570 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
159.8 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
36.6 99.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.0 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1 99.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-13 77 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.13 4e-10 67 Os09g0557300 NM_188820.1 - Conserved hypothetical protein 8e-1 At1g28100 unknown protein C.G. S.X.
0.04 2e-8 61 Os11g0557300 AK120782.1 - BSD domain containing protein 6e-2 At4g05070 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB - - - C.G. S.X.
0.02 1e-3 46 Glycine max GmaAffx.93499.1.S1_at CF809224 - - 3e-16 At5g41990 WNK8 (WITH NO LYSINE (K) KINASE 8) C.G. S.X.
0.05 1e-3 44 Hordeum vulgare Contig13797_at Contig13797 - - 1e-3 At2g13440 glucose-inhibited division family A protein C.G. S.X.
0.03 4e-3 44 Populus trichocarpa PtpAffx.211199.1.S1_at pmrna22009 hypothetical protein - 7e-1 At2g35850 unknown protein C.G. S.X.
0.03 2e-7 57 Triticum aestivum TaAffx.110204.1.S1_at CA662157 - - 2e+1 At5g01225 unknown protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1608743_at CB348761 - - 2e+0 At4g08230 glycine-rich protein C.G. S.X.
0.02 5e-3 42 Zea mays ZmAffx.994.1.A1_at AI855283 - - 3e+0 At5g11360 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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