CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0557300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os09g0557300 NM_188820.1 - Conserved hypothetical protein 8e-1 At1g28100 unknown protein S.X. H.G.
0.80 94.6 Os08g0463000 9636.m03627 - - 3e-1 At2g45070 SEC61 BETA S.X. H.G.
0.75 91.9 Os02g0277200 9630.m01658 - - 3e-1 At5g06060 tropinone reductase, putative / tropine dehydrogenase, putative S.X. H.G.
0.64 83.4 Os11g0141300 9639.m00366 - - 2e+0 At3g06700 60S ribosomal protein L29 (RPL29A) S.X. H.G.
0.60 79.7 Os11g0429700 9639.m02133 - - 6e-1 At5g62750 unknown protein S.X. H.G.
0.56 76.3 Os10g0151700 NM_194875.1 - Peptidase aspartic family protein 1e+0 At3g12440 extensin family protein S.X. H.G.
0.55 73.7 Os10g0499300 9638.m03155 - - 4e+0 At3g49230 unknown protein S.X. H.G.
0.50 68.0 Os02g0263300 NM_194219.1 - NBS-LRR protein (Fragment) 2e+0 At2g41100 TCH3 (TOUCH 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.4 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
62.7 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.6 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.3 99.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 688 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.13 1e-10 67 Os09g0558600 AK064751.1 - Conserved hypothetical protein 7e-1 At5g60460 sec61beta family protein C.G. S.X.
0.04 4e-1 36 Os01g0765100 9629.m05473 - - 5e+0 At5g35760 beta-galactosidase C.G. S.X.
0.02 4e-1 36 Os01g0622300 AK106203.1 - Uroporphyrinogen decarboxylase (At3g14930) 1e-11 At3g14930 HEME1 C.G. S.X.
0.02 2e+0 34 Os04g0656800 AK058886.1 - Peroxidase2 precursor (EC 1.11.1.7) 5e-8 At5g67400 peroxidase 73 (PER73) (P73) (PRXR11) C.G. S.X.
0.01 2e+0 34 Os06g0158500 AK101823.1 - Disease resistance protein family protein 3e-3 At1g31430 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 34 Arabidopsis thaliana At1g28100 839703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO - - - C.G. S.X.
0.04 1e+0 34 Glycine max Gma.6902.1.S1_a_at CD396278 - - 1e-12 At5g01010 - C.G. S.X.
0.03 6e+0 30 Hordeum vulgare HVSMEm0014K07r2_at HVSMEm0014K07r2 - - 1e+0 At5g50120 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.06 5e+0 32 Populus trichocarpa PtpAffx.221279.1.S1_at pmrna38048 hypothetical protein - 1e-2 At5g58660 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 9e-1 34 Triticum aestivum TaAffx.7694.1.S1_at CA653003 - - 3e-1 At5g26692 - C.G. S.X.
0.04 6e-2 36 Vitis vinifera 1614151_a_at CA816767 - - 3e-60 At4g17040 ATP-dependent Clp protease proteolytic subunit, putative C.G. S.X.
0.05 1e+0 32 Zea mays ZmAffx.760.1.A1_at AI734521 - - 1e+1 At5g42591 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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